Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D17
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     31   0.51 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)                 30   1.5  
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           29   2.7  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   2.7  
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          29   3.6  
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)                     28   4.7  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_23263| Best HMM Match : Herpes_UL73 (HMM E-Value=3.3)               27   8.2  

>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = +2

Query: 191 LFPIRSKAGQLQSTQRKELRSNTVLGHF*KDFRTVPTERQIRIVWQEEVTKDYQRSYEIV 370
           ++ ++S A QLQ+TQR EL    +        + V   +Q +++   + +       ++V
Sbjct: 594 MYQLQSMAEQLQATQRGELSQQQIDYLNRMHIQLVGEYQQAQMLEHYQASAALSEEMKLV 653

Query: 371 ARHVLGAAPKPFDKHTFMPSALDFYQTAL 457
             H    +   F  H F+  A D  Q  L
Sbjct: 654 QEHFQKQSASSFTPHAFVGEAFDHEQYKL 682


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 372  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 464
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 463 VSKCGLVKVKRTGHEGVLVEWFRCCTEHMASDNFIRSLIILCNFFLPYDSNLPFCRDC 290
           V++  L     T  EG    W   C +   +   ++S+I + N  +PY+ +LP   DC
Sbjct: 575 VTQLRLTTSSSTSEEGTKWCWSAKCQKAFTN---VKSMITVDNVLVPYNPDLPIILDC 629


>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
          Length = 877

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 463 VSKCGLVKVKRTGHEGVLVEWFRCCTEHMASDNFIRSLIILCNFFLPYDSNLPFCRDC 290
           V++  L     T  EG    W   C +   +   ++S+I + N  +PY+ +LP   DC
Sbjct: 358 VTQLRLTTSSSTSEEGTKWCWSAKCQKAFTN---VKSMITVDNVLVPYNPDLPIILDC 412


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 374 RHVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYDRIVGYINAF 514
           R +L   P P ++  ++P   DF+  +L D   +   D +  YIN +
Sbjct: 20  RRLLEVLPDPIEEDNYLPP--DFFYDSLADSPQFASLDELFNYINYY 64


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 37  LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 162
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 357 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYMTGLWVTLTHSSIT*S 530
           L  L+L   ++ HL   +ST T S    LT T     T  ++++ T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTL-TYSTLTHSTLTHSTLTHSTLTHS 110

Query: 531 LILQRNFISSAL 566
            +       S L
Sbjct: 111 TLTHSTITHSTL 122



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 360 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYMTGLWVTLTHSSIT* 527
           + L+ +  +   L H T T S    LT T     H    H +++++T  + TLTHS++T 
Sbjct: 40  LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99

Query: 528 SLILQRNFISSAL 566
           S +       S L
Sbjct: 100 STLTHSTLTHSTL 112


>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
          Length = 372

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 221 LQSTQRKELRSNTVLGHF*KDFRTVPTERQIRIVWQEEV 337
           L    +     NT   HF + + TV  +R I I W E++
Sbjct: 84  LDENSKSSTMKNTWTSHFKRGYLTVHPDRTISIEWDEKI 122


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 216  DNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKKLQRIINDLMKLSLAMC 383
            + Y   S KN   +  L  FE+  ++ +Q    +   +KK ++++      ++A+C
Sbjct: 1403 ETYGFRSTKNPPPVEELKEFEEDMLKMIQASYLQESPRKKNKQVLQKSTLRNIAIC 1458


>SB_23263| Best HMM Match : Herpes_UL73 (HMM E-Value=3.3)
          Length = 292

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
 Frame = +3

Query: 285 FVQSLQKGKFESYGKKKLQRIIN-----DLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTK 449
           F Q+  K KF S   K ++ ++           S   CS     +S +T S P  +    
Sbjct: 146 FQQAYLKSKFTSQALKHIKDLVKLRRQESEPSSSKDKCSTSKSGNSGATDSTPATVQIVL 205

Query: 450 PHFETLHSISYMTGLWVTL 506
           PH  T+ ++  M  L + L
Sbjct: 206 PHSVTVPTLKKMMQLLINL 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,459
Number of Sequences: 59808
Number of extensions: 385928
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)