Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D17
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 31 0.77
U41546-1|AAC48219.1| 96|Caenorhabditis elegans Hypothetical pr... 31 0.77
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 29 2.3
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 29 2.3
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 29 2.3
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 4.1
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 4.1
AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical ... 28 4.1
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 5.4
AL032623-8|CAA21514.1| 123|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 330 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYMT 488
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + S MT
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>U41546-1|AAC48219.1| 96|Caenorhabditis elegans Hypothetical
protein T25B6.4 protein.
Length = 96
Score = 30.7 bits (66), Expect = 0.77
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 198 PFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKKLQRIINDLMKLSLA 377
P ++ DNYN+ +K I +D + V S Q ++ R +LMKL
Sbjct: 28 PSEEQIDNYNIMKIKTNFFIDEIDFHLRGDVTSEQLMEYLGVYAIFYHRSRTELMKLLHE 87
Query: 378 MCSVQHLN 401
MC +HLN
Sbjct: 88 MCPNRHLN 95
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 327 KKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 473
+K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 105 QKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 327 KKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 473
+K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 132 QKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 327 KKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 473
+K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 178 QKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 399 NHSTSTPSCPVRLTFTKPHFETLHSISYMT--GLWVTLTHSSIT 524
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 399 NHSTSTPSCPVRLTFTKPHFETLHSISYMT--GLWVTLTHSSIT 524
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical
protein C04F5.9 protein.
Length = 534
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -3
Query: 454 CGLVKVKRTGHEGVLVEWFRCCTEHMASDNFIRSLIILCNFFLPYDSNL--PFCRDCTKV 281
C L+ + T H V RCC + ++ + + LC F Y +L + CT+V
Sbjct: 119 CNLLMPRGTLHHHYSVHTGRCCPAEITQNSVVPYVCDLCGFGFRYKKSLYNHWRHKCTEV 178
Query: 280 FS 275
+
Sbjct: 179 LA 180
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 339 VTSSCHTIRICLSVGTVRKSFQKCPRTVLLRSSLRCVDCSC 217
V S+C I ICL F CP +R + +C+ C
Sbjct: 1345 VGSACRPIDICLGESVCTNGFCHCPEN-YIRQNGQCISKEC 1384
>AL032623-8|CAA21514.1| 123|Caenorhabditis elegans Hypothetical
protein Y43F8B.7 protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 271 FLKRLSYSPYRKANSNRMARRSYKGL 348
+LKRL YSP N+ R R SY L
Sbjct: 12 YLKRLKYSPLLWRNAKRGTRSSYMWL 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,223
Number of Sequences: 27780
Number of extensions: 291878
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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