Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D14
(442 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 9e-07
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 47 8e-06
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 35 0.026
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 3.9
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 28 3.9
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3) 28 3.9
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 5.2
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 50.0 bits (114), Expect = 9e-07
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Frame = +2
Query: 14 EHREGFTALVREM------KQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNI 172
+ ++ FT L EM K A KP M L +V + ++V + ++D +N+
Sbjct: 532 QDKQHFTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWINL 591
Query: 173 QAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRT 352
+D + P P +TA + P ++ A+ YW++ G P K+ LG++ G
Sbjct: 592 MTYDLHGPWE-PYTGHHTALVGPPGDK---LTVSYAVKYWMEKGMPCGKIALGMANYGHA 647
Query: 353 WKLDSDSEISGVPPIHADKGGEAGPY 430
++L ++ + P + +K G + PY
Sbjct: 648 FELSDPTKTALGAPANVNK-GRSYPY 672
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 46.8 bits (106), Expect = 8e-06
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Frame = +2
Query: 20 REGFTALVREMKQALNV------KPNMQLVISVLPN-VNSSIYFDVPSIINLVDIVNIQA 178
++ FT L +E+ A + +P + L +V ++V I ++D++N+ A
Sbjct: 265 KQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMA 324
Query: 179 FDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK 358
+D P+ +TA + P + A YWI GAP K+ LG+ T GR +K
Sbjct: 325 YDL-RGMWEPETGHHTA-LEGPPGEE--LTVSFAAQYWIDKGAPASKIALGLGTYGRAFK 380
Query: 359 L 361
L
Sbjct: 381 L 381
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 44.8 bits (101), Expect = 3e-05
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Frame = +2
Query: 8 ESEHREGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIV 166
E +HR FT L +E+ A KP + L +V + +++ ++ +D +
Sbjct: 150 EDKHR--FTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWI 207
Query: 167 NIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTG 346
N+ ++D + + + A + + DPL A++ WI G P++K+ LGI G
Sbjct: 208 NLMSYDLHGDWEDT--TGHHAAMDSSTG-DPL-TVTHAVDLWIAGGMPSNKIALGIPLYG 263
Query: 347 RTWKLDSDSEISGVPPIHADKGGEAGPYT 433
R++ L + ++ P A KGG+ GPYT
Sbjct: 264 RSFTLKTANKTLDAP---ATKGGQ-GPYT 288
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 35.1 bits (77), Expect = 0.026
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +2
Query: 128 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW----- 292
+D+ I +D +N+ +D + PK +TA P D L AI YW
Sbjct: 584 YDIEGISKPLDWINVMTYDLHGTWE-PKTGHHTA--MGPDG-DKL-TLPFAIWYWMNNRD 638
Query: 293 ------IQNGAPTHKLVLGISTTGRTWKLDS 367
I+NG P +K+VLG+ T GR + L+S
Sbjct: 639 TWEKPGIRNGMPANKIVLGLGTYGRAFGLES 669
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 30.7 bits (66), Expect = 0.56
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 2 DKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 145
DK++E +E FT V + + PN ++VI++L N + SI F V S+
Sbjct: 705 DKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 292 DSKWCAYPQTCPWYQHHWTYVEA 360
D + C+YP T PW WT + +
Sbjct: 80 DERNCSYPTTGPWTTRPWTPISS 102
>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
Length = 441
Score = 27.9 bits (59), Expect = 3.9
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 226 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 53
SV F T + +I + C DV+ V + + V VNG QNA+ + + F + F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306
Query: 52 HLTYKSGEAF 23
H K +AF
Sbjct: 307 HHIAKMLQAF 316
>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
Length = 430
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 235 LRTAEPRSSTKRRRCYKLLD-SKWCAYPQTCPWYQHHWTYVEAR 363
LR + PRS ++ + K+ ++P P +HHWT E R
Sbjct: 26 LRNSTPRSKARKPLQFTSPSHGKFKSFPVKSPVRRHHWTLEEER 69
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 265 KRRRCYKLLDSKWCAYPQTCP 327
K RCY L DSK C P P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 117 LFTFGKTLITNCILGFTLSACFISRTRAVKPSL 19
++TFG + +C G+T C I++ + V PSL
Sbjct: 290 IYTFGNETVCDCNPGYTGQRCTINK-QCVVPSL 321
>SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Frame = +2
Query: 17 HREGFTALVREMKQALNVKPNMQLVISVLP---------NVNSSIYFDVPSIINLVDIVN 169
H +GF A R K VK ++ ++ L ++NS+ +FDV + + ++N
Sbjct: 17 HYDGFAA--RRQKMLGQVKTVLEYLLQALKERDNMFDFEHINSATFFDVKTSNTVEVLLN 74
Query: 170 IQAFD 184
+Q FD
Sbjct: 75 VQGFD 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,955
Number of Sequences: 59808
Number of extensions: 287043
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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