Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D12
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    29   0.26 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   0.60 
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   4.3  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   4.3  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    24   7.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   7.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    23   9.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   9.8  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 50  SPYWPWLPQTEFTWWTIAGVPSDAYSDHSLLFATPGSLSYSQPS 181
           +PY P    +  +  ++ GV + AY+  SL +A    L YS+PS
Sbjct: 323 TPYLPSKSNSSTSLHSMYGVGTTAYAPQSLRYAHYNYLPYSRPS 366


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 76  DRVHVVDNSWCSIGRV**PQFVVRDTRISFLLSTIKTVLSEIMNP*ALDRRSSISYHPNY 255
           D ++V+D+   +  +V  P F   ++ +++  S  +++ S    P    R    S HPN 
Sbjct: 231 DTLNVIDSYPTAPDQVALPPFPDTNSTLTYTPSNSQSIYSSQSQPSPYSRPLLSSVHPNL 290

Query: 256 PP 261
           PP
Sbjct: 291 PP 292


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 141 CSRHPDLFLTLNHQNGPIGNYEPISTGPAFV---YFISSQLSTQAMRRP 278
           C RH DL      +   I + + + +G  F+    F+S+Q++T ++R P
Sbjct: 235 CERHRDLVKPRPIEEKRILSTQDLQSGWKFIDNQMFLSTQINTSSLREP 283


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 163 KRSGCREQQTVVTIRVRWNTSYCPPRE 83
           KRSG  ++   V +   W   +CPP +
Sbjct: 436 KRSGATKRAQDVPLIKHWYLEHCPPNQ 462


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -3

Query: 203 IISDRTVLMVESKKEIRVSRTTNCGHY 123
           ++++  +L++ S+K +R +  T C HY
Sbjct: 247 LMNEPKILVLGSEKGLRTNILTQCSHY 273


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 170 SQPSKRSYRKL*THKHW 220
           S+P +R++RK    KHW
Sbjct: 547 SKPERRTFRKFPYPKHW 563


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 123 YASDGTPAIVHHVNSVCGSHGQYGEEE 43
           +  DG P ++ +V        QYG+ E
Sbjct: 229 WGEDGAPVVIDYVGCYDSDFDQYGDTE 255


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 129 TTVCCSRHPDL--FLTLNHQNGPIGNYEPIST 218
           T V CS    L  FL + H N P+  YE I T
Sbjct: 387 TGVLCSSLKLLSKFLDVTHMNVPLSKYENIVT 418


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 306 DIYFPPRPREVVASLGWIIGMI*NRRTPVQCLW 208
           D+++P +  E + S  W+  M  +RR  +   W
Sbjct: 660 DLHYPSQQLESILSFEWLFKMSLDRRVDLPPGW 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,626
Number of Sequences: 5004
Number of extensions: 30587
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)