Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D12
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1726 - 29062654-29064414 29 1.3
07_03_0552 + 19383475-19383559,19383807-19385129,19385211-19385299 27 5.1
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 27 5.1
01_01_1038 - 8195211-8195839,8195961-8196087 27 5.1
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 26 6.7
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 6.7
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 26 6.7
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 26 6.7
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 26 6.7
09_03_0184 - 13205741-13206181 26 8.9
02_04_0512 + 23565210-23566058,23566824-23568224 26 8.9
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 26 8.9
>07_03_1726 - 29062654-29064414
Length = 586
Score = 28.7 bits (61), Expect = 1.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 62 PWLPQTEFTWWTIAGVPSD 118
PW P+ WW AGVP +
Sbjct: 248 PWWPEGSEAWWPEAGVPKE 266
>07_03_0552 + 19383475-19383559,19383807-19385129,19385211-19385299
Length = 498
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 156 PGVANNKLWSLYASDGTPAIVHHVNSVCG 70
PG + W L+ +GTP + HV+ G
Sbjct: 353 PGPVSEANWGLFHGNGTPVYLLHVSGAGG 381
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 159 DPGVANNKLWSLYASDGTPAIVHHVNSVCGSHGQYGEEEKHES 31
+P V++ L+ + + G A V H+NS G GEE+ E+
Sbjct: 49 NPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQLGEA 91
>01_01_1038 - 8195211-8195839,8195961-8196087
Length = 251
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 256 PPKRCDDLSRPWWEVNVS*RSGIL 327
PP+R D+S+P WE R+GI+
Sbjct: 120 PPRRHFDMSQPAWETIAVYRAGIV 143
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +2
Query: 122 YSDHSL--LFATPGSLSYSQPSK 184
Y HS LFA PG LS S PSK
Sbjct: 204 YFSHSTSPLFAAPGCLSSSNPSK 226
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 151 CREQQTVVTIRVRWNTSYCPPRELC 77
C TV +R RW+ + CP +LC
Sbjct: 2609 CDGCSTVPILRRRWHCNICPDFDLC 2633
>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 56 YWPWLPQTEFTWWTIAGVPSDAYSDHSLLFATPG 157
+W W WTI GV + ++D + PG
Sbjct: 1341 WWRWFYWANPVSWTIYGVIASQFADSDRVVTVPG 1374
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 59 WPWLPQTEFTWWTIAGVPSDAYSDHSLLFATPG 157
W WL +F + +P D SD S F T G
Sbjct: 161 WNWLYLADFASFKPTYIPDDDPSDFSFFFDTGG 193
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 156 PGVANNKLWSL-YASDGTPAIVHH----VNSVCGSHGQYGEEEKHESFHCRIV 13
PG + LW + + + A +HH V++ C GQY E+ H F C+ V
Sbjct: 163 PGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPV 215
>09_03_0184 - 13205741-13206181
Length = 146
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 169 VRKRSGCREQQTVVTIRVRWNTSYCPPRELCLRQPWPI 56
+R+R G E + T R + PP++ LR WPI
Sbjct: 100 MREREGIPELEEAETRGQRRRRTPRPPKQQKLRSEWPI 137
>02_04_0512 + 23565210-23566058,23566824-23568224
Length = 749
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 153 GVANNKLWSLYASDGTPAIVHHVNSVCGSHGQYGEEEKHES 31
G A ++ S +S+G HH ++ CG+ +G EK S
Sbjct: 492 GTAESRRPSSCSSNGKCDHAHHGDAKCGNAENHGSSEKRLS 532
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 47 SSPYWPWLPQTEFTWWTIAGVPSDAYSDHSLLFATPGSLS 166
S+ W WL + +F + GV S Y+ H L A G+ S
Sbjct: 456 SNARW-WLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYS 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,021
Number of Sequences: 37544
Number of extensions: 210192
Number of successful extensions: 594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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