Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D12
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.75 
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_11071| Best HMM Match : zf-MYM (HMM E-Value=5.2)                    29   1.3  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    28   1.7  
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)             28   2.3  
SB_37252| Best HMM Match : DUF1497 (HMM E-Value=1.1)                   27   3.0  
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_14937| Best HMM Match : DUF1497 (HMM E-Value=1)                     27   3.0  
SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)              27   5.3  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              26   9.2  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2    TTLNTIRQ*KLSCFSSSPYWPWLPQ-TEFTWWTIAGVPSDAYSDHSLLFATPGS 160
            T L  +RQ  ++C  +  +  +L + T    W I G+PSDA+S  + +  T G+
Sbjct: 2676 TWLAQVRQLGVACNPNFSFSGFLAKPTTVREWNIQGLPSDAFSTENGVMVTRGN 2729


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 177 HQNGPIGNYEPISTGPAFVYFI--SSQLSTQAMRRPLSAVVGSKCL--IKIRDFKTRR 338
           H++GP+    P++ GP  +Y +  S   S + M+R +     +K +  + +  F TR+
Sbjct: 21  HKSGPLSATRPVTKGPISIYGVPYSEHSSYEEMKRFVQFTRPTKIVPTVNVHSFATRK 78


>SB_11071| Best HMM Match : zf-MYM (HMM E-Value=5.2)
          Length = 529

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 122 YSDHSLLFATPGSLSYSQPSKRSYRKL*THKHWTGVRLFHIIPII 256
           YS  SLL  +P   ++S+P  ++Y+KL   +     R++  + I+
Sbjct: 351 YSTPSLLLKSPHKTAHSKPCVQAYQKLYREEFSASPRVYKFLSIV 395


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 114 RTRIVTTVCCSRHPDLFLTLNHQNGPIGNYEPISTGPAFVYFISSQLSTQAMRRPL 281
           R  + TT    RHP     L H + P   Y   ST P+ ++F+S  L    +  PL
Sbjct: 151 RVPLFTTFATLRHP-----LQHSSCPSIYYLRYSTPPSTIFFVSLYLLPSLLYAPL 201


>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
          Length = 406

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 32  LSCFSSSPYWPWLPQTEFTWWTIAGVPSDAYS 127
           + C  + PYW W  Q    W T+   PSD ++
Sbjct: 216 IDCRVTIPYWQWTAQAGHLWRTL---PSDVWA 244


>SB_37252| Best HMM Match : DUF1497 (HMM E-Value=1.1)
          Length = 113

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 159 DPGVANNKLWSLYASDGTPAIVHHVNSVCGSHGQYGEEEKHESFH 25
           +P  AN   W+   S       HH+    G+  Q GE  +HE+ +
Sbjct: 3   NPSFANLPYWASNLSSVVDCKAHHIIREIGARWQKGELVEHEAIN 47


>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 32  LSCFSSSPYWPWLPQTEFTWWTIAGVPSDAYSDHSLLFATPGSLSYSQPSKRSYRK 199
           L   S    WP L  + F W   +  PS+  S H+     P    YS  + +++RK
Sbjct: 47  LLTLSQFAVWPQLLSSSFCWRNFSQRPSELLSRHAGQGTNPRK-CYSSSTIKAFRK 101


>SB_14937| Best HMM Match : DUF1497 (HMM E-Value=1)
          Length = 113

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 159 DPGVANNKLWSLYASDGTPAIVHHVNSVCGSHGQYGEEEKHESFH 25
           +P  AN   W+   S       HH+    G+  Q GE  +HE+ +
Sbjct: 3   NPSFANLPYWASNLSSVVDCKAHHIIREIGARWQKGELVEHEAIN 47


>SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)
          Length = 479

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 325 KSLIFMRHLLPTTAERGRRIAWVDNWDDM 239
           KS IF+ H+LP       R      WDDM
Sbjct: 17  KSAIFLHHMLPVLRHVSNRNLSAIIWDDM 45


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 156 PGVANNKLWSLYASDGTPAIVHHVNSVCGSHGQYGEEEKHES 31
           P  +NN++ S   +  T  I H  +SV  SHG  G  ++HES
Sbjct: 148 PPTSNNEVVSSDITHSTSTITHPASSV--SHG--GGPDRHES 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,396
Number of Sequences: 59808
Number of extensions: 241991
Number of successful extensions: 599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)