Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D12
         (343 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    29   1.1  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    27   2.5  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.3  
At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical...    26   5.7  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    26   5.7  
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    26   7.6  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    25   10.0 
At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4 f...    25   10.0 
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    25   10.0 
At2g25730.1 68415.m03084 expressed protein                             25   10.0 
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    25   10.0 

>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 123 YASDGTPAIVHHVNSVCGSHGQYGEEEKHESFHCRI 16
           Y  +G P+   H   +CG   +  + +K+E +HC +
Sbjct: 191 YLKNGPPSYADHKCLLCGREFEDQQGQKYELYHCDV 226


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 183 NGPIGNYEPISTGPAFVYFISSQLSTQAMRRPL 281
           NGPI N +P+S GP     +  + ST     P+
Sbjct: 274 NGPIQNRQPVSVGPVPTATVKVEPSTVTSMAPV 306


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 17  IRQ*KLSCFSSSPYWPWLP 73
           I + + SC  SSP+ PW+P
Sbjct: 99  IEEKRYSCIISSPFTPWVP 117


>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
           ethylene-insensitive3 GI:2224933 from [Arabidopsis
           thaliana]
          Length = 628

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 62  PWLPQTEFTWWTIAGVPSD 118
           PW P  +  WW   G+P D
Sbjct: 213 PWWPNGKEDWWPQLGLPKD 231


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 151  CREQQTVVTIRVRWNTSYCPPRELC 77
            C    TV  +R RW+ + CP  +LC
Sbjct: 2618 CDGCSTVPILRRRWHCTVCPDFDLC 2642


>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 224 RSSAYGFI-ISD--RTVLMVESKKEIRVSRTTNC 132
           RS  YGFI   D   TV  +++ K I   RTTNC
Sbjct: 51  RSKGYGFITFRDYVSTVRALQNSKPIIDGRTTNC 84


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 77   TEFTWWTIAGVPSDAYSDHSLLFATPGSLSYSQPSKRSY 193
            T   WW +     + Y  HS LF     ++  +P K S+
Sbjct: 1235 TALRWWILIEDTENDYIYHSDLFTLTKRMARGEPQKLSF 1273


>At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4
           family;
          Length = 644

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 111 GTPAIVHHVNSVCGSHGQY-GEEEKHESFHCRIVFRV 4
           G+P++V+ +    G  GQY G +E+    H  + F V
Sbjct: 151 GSPSVVYQLGYHVGLKGQYEGSKEQKYFMHNHLAFTV 187


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
            protein similar to DEMETER protein [Arabidopsis thaliana]
            GI:21743571; contains Pfam profile PF00730: HhH-GPD
            superfamily base excision DNA repair protein
          Length = 1309

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 236  IDERRSSAYGFIISDRTVLMVESKKEIRVSRTTNC 132
            I ERRS     +++ R  L +  +KE    R+ NC
Sbjct: 990  IHERRSKRKPVVVNFRPSLFLYQEKEQEAQRSQNC 1024


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 291 PRPREVVASLGW--IIGMI*NRRTPVQCLW 208
           PR R +VAS+GW  + G    RR  ++ LW
Sbjct: 423 PRLRPLVASMGWDLLPGKTATRRKLMRLLW 452


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 206 THKHWTGVRLFHIIPIIHPSDATTSLGRGGK*MSHKDQGF 325
           T K   G  L  I+P I  +D  T+ GR  + +S    GF
Sbjct: 31  TRKRINGTFLLKILPPIQSADLRTTGGRSSRPLSAFRSGF 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,635
Number of Sequences: 28952
Number of extensions: 165372
Number of successful extensions: 438
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)