Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D10
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0313 + 14233049-14234362,14234558-14235523 31 0.46
07_03_1547 + 27623945-27625612 29 1.1
08_02_1094 + 24275719-24277029 27 4.3
02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209 27 4.3
08_01_0255 + 2089543-2089583,2089696-2090089,2090797-2090862,209... 27 5.6
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 27 5.6
02_05_0090 - 25742533-25744557 27 5.6
12_01_0111 - 857627-857975,858123-858334,858428-858550,858662-85... 27 7.5
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 27 7.5
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 9.9
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 30.7 bits (66), Expect = 0.46
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 300 LKYFLLKHECGWSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLSVFRLTRVTSSSV 121
L+Y + H C L +R+ S+ D+ + A SPDVTK +++ RL T+ ++
Sbjct: 586 LRYLDISHSCVKELPEKF--WRLYSLQVVDARRSSLRAISPDVTKLINLRRLALPTNCAL 643
Query: 120 KL 115
KL
Sbjct: 644 KL 645
>07_03_1547 + 27623945-27625612
Length = 555
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 91 HIFEEVIVQLY---R*TCDSSQSKNGKPFRHIRTISMDDYIGAI 213
H F EVI L T D ++ GK RH RT+ D Y G I
Sbjct: 285 HCFPEVIAGLRIHGELTVDPEKTPEGKSIRHFRTLLDDAYRGRI 328
>08_02_1094 + 24275719-24277029
Length = 436
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 122 TDELVTRVNRKTESHFVTSGLSAWTII 202
T V V RKT H + + +SAWT++
Sbjct: 207 TGPKVAGVARKTSPHVLAAAVSAWTLV 233
>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
Length = 455
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 46 NNEKFIRKLR*LLGSHIFEEVIVQLYR*TCDSSQSKNGKPFRHIRT 183
N+E IR +R ++ + + E I R C+ + KN +P R+ T
Sbjct: 373 NDENLIRYIRLVMDAAVNLEDIFLYKRMACEKCKGKNPRPLRYPST 418
>08_01_0255 +
2089543-2089583,2089696-2090089,2090797-2090862,
2091067-2091189,2091605-2091685,2091765-2091857,
2092103-2092178,2092255-2092334,2092433-2092504,
2092937-2092996,2093177-2093273,2093498-2093561,
2093706-2093765,2093942-2094035
Length = 466
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 195 VHADSPDVTKWLSVFRLTRVTSSSVKLYNDLFK 97
+H++ D TKWL F L++ + + L+ + K
Sbjct: 324 IHSNYVDCTKWLGDFVLSKSVENEILLWESITK 356
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 131 LVTRVNRKTESHFVTSGL--SAWTIISALSLGATDETLNEINVVLRLHPHSCFNRKYFNI 304
L+ ++R HFV L S W +++ + +TD N++ +V++ + Y +
Sbjct: 19 LLVALSRCASHHFVAMFLLVSDWWVVAMMQKKSTDNINNKLQLVMK---SGKYTLGYKTV 75
Query: 305 LKEIGENDGGVLKLS 349
LK + + G ++ L+
Sbjct: 76 LKTLRNSKGKLIILA 90
>02_05_0090 - 25742533-25744557
Length = 674
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 219 PNDSADIIVHADSPDVTKWLSVFRLTR-VTSSSVKLYND 106
PN S D ++A++ + W FR+ + + SS + L+ D
Sbjct: 435 PNGSLDKYLYAENSKILSWAQRFRIIKGIASSILYLHED 473
>12_01_0111 -
857627-857975,858123-858334,858428-858550,858662-858856,
859259-859498
Length = 372
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 74 DDFWAHTFLKRSLYNFTDELVTRVNRKT-ESHFVTSGLSAWTIIS 205
DDF++ +K F + +VTR+N T E++ + AW +I+
Sbjct: 128 DDFFSDPTIKSYYKAFVEAVVTRINTVTNETYKDDPTILAWELIN 172
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -1
Query: 300 LKYFLLKHE---CGWSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKW 163
+KY L +E GWS + + S ND+ I+ D+ T+W
Sbjct: 1026 MKYGCLSYEGTNTGWSKSEVPVLSLKSDSVTNDARQTIISVDTKSSTRW 1074
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 309 FKILKYFLLKHECGWSLNTTLI 244
F++L+ FL+ HEC SL L+
Sbjct: 661 FELLQMFLISHECPASLREDLV 682
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,644
Number of Sequences: 37544
Number of extensions: 162079
Number of successful extensions: 455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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