Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D10
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18694| Best HMM Match : SNF7 (HMM E-Value=0.46) 29 1.1
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 29 1.4
SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 3.3
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 28 3.3
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17) 28 3.3
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 3.3
SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07) 27 4.4
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 27 5.8
SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_18694| Best HMM Match : SNF7 (HMM E-Value=0.46)
Length = 238
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 138 LESIEKRKAISSHQDYQHGRLYRRYH*ALLM 230
+ S EKR+++S Q + RL ++YH LLM
Sbjct: 58 IASEEKRRSVSEDQKKELSRLLKKYHKTLLM 88
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 138 LESIEKRKAISSHQDYQHGRLYRRYH*ALLM 230
+ S EKR+++S Q + RL ++YH LLM
Sbjct: 498 IASEEKRRSVSEDQKKELSRLLKKYHKKLLM 528
>SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 138 LESIEKRKAISSHQDYQHGRLYRRYH*ALLM 230
+ S EKR+++S Q + RL ++YH LLM
Sbjct: 311 IASEEKRRSVSEDQKKELSRLLKKYHKKLLM 341
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 267 WSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLS 157
W LNT L+SF +S + + S D+ + T+++S
Sbjct: 186 WMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVS 222
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 267 WSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLS 157
W LNT L+SF +S + + S D+ + T+++S
Sbjct: 346 WMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVS 382
>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
Length = 398
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 86 AHTFLKRSLYNFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVLRL 265
A L+R++ DE V+++T+ + S + + L++ T+ +++ V+ L
Sbjct: 280 ARALLRRNVILIIDEATAHVDQRTDVLIQKTIRSKFKDCTVLTIAHRLNTIMDMDRVMLL 339
Query: 266 HPHSCFN 286
+P +C N
Sbjct: 340 NPCTCLN 346
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 336 TPPSFSPISFKILKYFLLKHECGWSLNTTLISFRVSSVAPND-SADIIVHADSPDVTKW 163
TP F+P+ KIL+Y L+K++ + TL + R S+ ND ++++ D W
Sbjct: 294 TPEHFTPLVGKILRYLLMKNK---GIPQTL-ALRHGSILNNDIGCVLMMNGDCQVARNW 348
>SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07)
Length = 174
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 308 KEIGEN--DGGVLKLSGAIFTDFENE 379
K +GEN DGG LKLS F D E E
Sbjct: 125 KTLGENIADGGGLKLSFMAFRDLEKE 150
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 378 SFSKSVNIAPESFKTPPSFSPISFKILKYFLLKHEC---GW 265
S + +IAP+S+ P +F+P++ + Y L+ H GW
Sbjct: 31 SVYRRASIAPQSYGAPFAFAPLNPMVSAYPLMGHRVQPYGW 71
>SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 375 FSKSVNIAPESFKTPPSFSPIS 310
+S S + P SFK PSFS +S
Sbjct: 313 YSSSFKVYPSSFKVHPSFSRLS 334
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 351 PESFKTPPSFSPISFKILKYFLLKHE 274
P+ ++ PP ++P S L FLL+ E
Sbjct: 396 PQEYQAPPPYNPNSLARLLVFLLREE 421
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,248,420
Number of Sequences: 59808
Number of extensions: 204532
Number of successful extensions: 599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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