Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D10
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine re...    31   0.24 
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    30   0.55 
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    30   0.55 
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    30   0.55 
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein266 protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -1

Query: 342 FKTPPSFSPISFKILKYFLLKHECGWSLNTTLISFRVSSVAPNDSADIIVHADSP-DVTK 166
           F+TP +   + + ++ +      C W L    I + +          I+ + D P D+  
Sbjct: 31  FQTPKTMGSVKYVMMNFHAWCILCDWMLAVMTIPYLLFPAMVGFPLGILKYFDVPIDIQV 90

Query: 165 WLSVFRLTRVTSSSVKLYNDLFKNV*AQKS 76
           +L    +T V SS V ++ + +  + AQK+
Sbjct: 91  YLVAVGITAVYSSIVLIFENRYYMMFAQKT 120


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 116 NFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRK 292
           N  D  V  V+ +   H +     A  I++ALS   T  ++ E  V   R+HPH+  + +
Sbjct: 446 NHGDVGVVVVDERNREHVI----HAQHIVNALSSLRTTPSMRESPVGRKRMHPHTSNSFE 501

Query: 293 YFNILKEIGENDGGV 337
           + N  +E+ +N+G +
Sbjct: 502 FLNCNQEMNKNEGAL 516


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 116 NFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRK 292
           N  D  V  V+ +   H +     A  I++ALS   T  ++ E  V   R+HPH+  + +
Sbjct: 466 NHGDVGVVVVDERNREHVI----HAQHIVNALSSLRTTPSMRESPVGRKRMHPHTSNSFE 521

Query: 293 YFNILKEIGENDGGV 337
           + N  +E+ +N+G +
Sbjct: 522 FLNCNQEMNKNEGAL 536


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 116 NFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRK 292
           N  D  V  V+ +   H +     A  I++ALS   T  ++ E  V   R+HPH+  + +
Sbjct: 482 NHGDVGVVVVDERNREHVI----HAQHIVNALSSLRTTPSMRESPVGRKRMHPHTSNSFE 537

Query: 293 YFNILKEIGENDGGV 337
           + N  +E+ +N+G +
Sbjct: 538 FLNCNQEMNKNEGAL 552


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 318 PISFKILKYFLLKHE 274
           P+ F +LKYF LKH+
Sbjct: 85  PVIFLLLKYFFLKHQ 99


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 318 PISFKILKYFLLKHE 274
           P+ F +LKYF LKH+
Sbjct: 85  PVIFLLLKYFFLKHQ 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,377
Number of Sequences: 27780
Number of extensions: 158947
Number of successful extensions: 432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)