Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D10
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   3.6  
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    27   3.6  
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen...    26   8.3  
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen...    26   8.3  
At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identic...    26   8.3  

>At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 298

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 372 SKSVNIAPESFKTPPSFSPISFKILKYFLLKHECGWSLNTTLISFRVSSVAPNDSAD 202
           S SV + P   K   S  P +F + + FL + EC   ++    S + S+VA NDS +
Sbjct: 27  SSSVFVNPSKVKQVSS-KPRAF-VYEGFLTELECDHMVSLAKASLKRSAVADNDSGE 81


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 261 LNTTLISFRVSSVAPNDSADIIVHADSPDVTKW 163
           ++  LI   +++++PN     + H DSP+ T W
Sbjct: 554 MSENLIHSPITTLSPNSKRVSLSHLDSPESTPW 586


>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
           family protein contains PFAM zinc-binding dehydrogenase
           domain PF00107
          Length = 427

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 71  CDDFWAHTFLKRSLYNFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETL 238
           C+DF+A+   K +LY+    L  R +      +   G++ + +  A  L    E+L
Sbjct: 163 CEDFFAYNRAKGTLYDGETRLFLRHDDSPVYMYSMGGMAEYCVTPAHGLAPLPESL 218


>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
           family protein contains PFAM zinc-binding dehydrogenase
           domain PF00107
          Length = 427

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 71  CDDFWAHTFLKRSLYNFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETL 238
           C+DF+A+   K +LY+    L  R +      +   G++ + +  A  L    E+L
Sbjct: 163 CEDFFAYNRAKGTLYDGETRLFLRHDDSPVYMYSMGGMAEYCVTPAHGLAPLPESL 218


>At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identical
           to purple acid phosphatase (PAP22)GI:20257494 from
           [Arabidopsis thaliana]
          Length = 434

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 351 PE-SFKTPPSFSPISFKIL 298
           PE SFKTPPS  P+ F I+
Sbjct: 128 PEFSFKTPPSTFPVEFAIV 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,874,576
Number of Sequences: 28952
Number of extensions: 143222
Number of successful extensions: 388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)