Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D09
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40480.1 68418.m04909 expressed protein ; expression supporte...    30   1.2  
At5g28590.1 68418.m03487 DNA-binding protein-related contains si...    27   8.4  
At2g21050.1 68415.m02499 amino acid permease, putative similar t...    27   8.4  
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    27   8.4  

>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 75   QIKLGAATAGLVYDNVNRHGATLTNTHIPGIGDKLSVAGKVNLFHNNDH 221
            Q K+       +Y  V+  G TLTN H+P  G K  V  + N F   +H
Sbjct: 1597 QTKVTVLFGNTIY--VDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEH 1643


>At5g28590.1 68418.m03487 DNA-binding protein-related contains
           similarity to DNA-binding proteins
          Length = 216

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 249 RNMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGK 395
           RN     H  +++ +GGG  +M K   G   + A    +    Y+L GK
Sbjct: 166 RNPNDEHHTITSSALGGGAHFMMKPPQGMHMTHARPSEWGGTGYDLSGK 214


>At2g21050.1 68415.m02499 amino acid permease, putative similar to
           AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 483

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 393 KLNLFKTPSTSLDFTAGWHKFDTPFMKSSWEPSTWFSL 506
           KL L+ T +T++ +T G H      M + W+P  + S+
Sbjct: 225 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSI 262


>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +3

Query: 63  DLTNQIKLGAATAGLVYDNVNRH--GATLTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAK 236
           D  ++ ++G A  G  YD+  RH  G + TNT        +++    N+  +N+ ++  K
Sbjct: 347 DFPDKPEMGKAKPGCSYDSYERHTLGISETNTEEDFCVSSMALDELNNITRDNNKEIGLK 406

Query: 237 AFATRNMPTISH--LPSTNTV 293
               R M       LPS  ++
Sbjct: 407 LRRGRRMKNFQKEILPSLTSL 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,054,195
Number of Sequences: 28952
Number of extensions: 291153
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)