Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D08
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.48 
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.5  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    27   1.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   2.6  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   3.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   4.5  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   5.9  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 175 YKQQVLRLLHMLWYFPSENGMLDHR 249
           Y  +VLR  H  WY P ++ M+D R
Sbjct: 42  YTSKVLRCSHCGWYEPVDSAMIDQR 66


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 110 WRFLLHCVYGRSLNSIYVSLPS*CTPLNNHYYTK 9
           W   L  + G SLNS++  + S  TP +N   T+
Sbjct: 118 WAVFLGIIVGFSLNSVFTFIDSFATPSSNSTVTE 151


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 38  YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVS 148
           YI M+G++ L ++ D +++  G  + N    P P +S
Sbjct: 170 YITMQGANSLKAQQDLLNSFTGAPSNNSHNIPDPNLS 206


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 65   LNSRNDHIHNGEGTATENRRAPPPPYVSVEAQP 163
            + S+N H  NG   A  N      P+V+V A P
Sbjct: 1084 VTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVP 1116


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 474 ALTYPCLFLCTPTTSNIVNIKCNARNIINIEQNITKVKPKLRFSVLLF 331
           A TYP     T  +     +   +  I N+  N  KVKP   +S LL+
Sbjct: 131 ATTYPLDIARTRLSIETAGLTSRSLAINNVANNSLKVKPLTLWSTLLY 178


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 35  VYIKMEG--SHKLNSRNDHIHNGEGTATENRRAPPPP 139
           V +K EG  +++ +  N +++NG   +  +  APPPP
Sbjct: 91  VAVKHEGISNNESSDENMNVNNGNLDSFSSSSAPPPP 127


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 254 NNR*SSIPFSEGKYHSMCRSRNTCCL 177
           +NR S IPFS+ ++H      +  CL
Sbjct: 119 DNRESEIPFSDTRFHDEFDRESRACL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,587
Number of Sequences: 5004
Number of extensions: 39447
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)