Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D08
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0399 - 20955319-20955838,20955939-20956201                       29   1.5  
06_02_0265 - 13586552-13587985                                         27   5.9  
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    27   5.9  
12_02_0532 + 20093147-20093794                                         27   7.8  
12_01_0753 + 6810239-6810661,6812495-6812584,6812724-6812894,681...    27   7.8  

>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 86  IHNGEGTATENRRAPPPPY-VSVEAQ 160
           +  G+G A  N+ APPPP+ +SV A+
Sbjct: 130 LSGGDGIAASNKAAPPPPHPISVPAK 155


>06_02_0265 - 13586552-13587985
          Length = 477

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 137 AVAVHAYSRWRFLLHCVYGRSLNSIYVSLPS*CTPLNNHYYTKNV 3
           AV  HA S   F+ HC +  +L ++   +P  C PL+   +   V
Sbjct: 345 AVLQHA-STGAFVTHCGWNSTLEAVAAGVPMVCWPLDAEQWMNKV 388


>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
 Frame = +2

Query: 38  YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYY---DSYTC 208
           Y++ME + K +S    I        +    PP P  +  +          YY   DS TC
Sbjct: 332 YVRMERNIKASSGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTC 391

Query: 209 CGIFPLKTGCLIIGYYNLVSAVC 277
           C I+     C   G   L  A C
Sbjct: 392 CCIYEYGKYCYAWGCCPLEGATC 414


>12_02_0532 + 20093147-20093794
          Length = 215

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 205 CVGVVILAACNHVDXXXXXXXXXXXRC 125
           C G VI AAC HVD            C
Sbjct: 87  CTGEVIFAACGHVDRCSSALETELLAC 113


>12_01_0753 +
           6810239-6810661,6812495-6812584,6812724-6812894,
           6813015-6813109,6813538-6813658,6813884-6814015
          Length = 343

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 47  MEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVVTSS 184
           M+G  KL  R   +H+G G A      PPPP V++ A+  +V   +
Sbjct: 73  MDGLAKLRVR---VHHGVGGAGAAAVEPPPPEVALLARNFSVAVDT 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,816
Number of Sequences: 37544
Number of extensions: 257361
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)