Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D08
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    30   0.99 
AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z81468-4|CAB03877.1|  394|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL021181-1|CAA15983.1|  394|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine re...    27   5.3  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z81142-8|CAO82053.1|  370|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    27   7.0  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    27   7.0  
AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
 Frame = +2

Query: 92  NGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYYDSYTCCGIFPLKTGCL-IIGYYNLV- 265
           +G G    NR  PPPP   +    V ++            G  P+  G L  I Y  LV 
Sbjct: 104 DGMGNLNTNRGPPPPPVKGINVPLVAIILGLLSRAIMLLTG--PINIGILWAIFYVTLVS 161

Query: 266 --SAVCXXXXXXXXXXXXNNYMDPNNNTEK-RNLGLTLVIFCSILMIFLALHLIFTILL 433
             SAV                M  NN  EK  N G  ++ F    + F A  L+  ++L
Sbjct: 162 RFSAVGLNNQTRNELAAVFQAMGNNNQFEKIMNAGFKIIEFIQTTVSFAASFLLAHMIL 220


>AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical
           protein Y45G5AL.2 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 320 YMDPNNNTEKRNLGLTLVIFCSILMIFLA 406
           +MD NN +EK  +G+T ++  S +++ LA
Sbjct: 284 FMDINNRSEKFTVGMTNIMSMSFILVILA 312


>Z81468-4|CAB03877.1|  394|Caenorhabditis elegans Hypothetical
           protein Y54G11B.1 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 361 LNFGDILLYINDISC-VAFDIYNITSSRCAQ 450
           LN  D+L  ++ I+C VAF +Y+ TSSR  Q
Sbjct: 297 LNLADVLDLLSLINCYVAFLVYSFTSSRYRQ 327


>AL021181-1|CAA15983.1|  394|Caenorhabditis elegans Hypothetical
           protein Y54G11B.1 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 361 LNFGDILLYINDISC-VAFDIYNITSSRCAQ 450
           LN  D+L  ++ I+C VAF +Y+ TSSR  Q
Sbjct: 297 LNLADVLDLLSLINCYVAFLVYSFTSSRYRQ 327


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 125  APPPPYVSVEAQPVNVVTSSKYYDS 199
            APPP Y+++ A PVN +     Y S
Sbjct: 1078 APPPHYLAIAAPPVNSIYGQTEYTS 1102


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 125  APPPPYVSVEAQPVNVVTSSKYYDS 199
            APPP Y+++ A PVN +     Y S
Sbjct: 1078 APPPHYLAIAAPPVNSIYGQTEYTS 1102


>AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine
           receptor, class j protein9 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 386 ILMIFLALHLIFTILLVVGVHKNKHGYV 469
           I  IF  L+ I  IL  +G+  NKHG+V
Sbjct: 47  IFAIFDILYSISEILTPIGITGNKHGFV 74


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +2

Query: 92  NGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYYDSYTCCGIFPLKTGCLIIGYYNLVSA 271
           N +GTA    R     +VS    P+ V  +  +++ ++C            +GY N ++ 
Sbjct: 753 NSDGTALNCSRCDSGRFVSPSCFPIPVPVNDVHFEPFSCLSFVRSLPAQKTLGYRNQMNQ 812

Query: 272 V 274
           V
Sbjct: 813 V 813


>Z81142-8|CAO82053.1|  370|Caenorhabditis elegans Hypothetical
           protein ZK1037.13 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 367 FGDILLYINDISCVAFDIYNIT 432
           FG++LL +N + C     YN T
Sbjct: 328 FGEVLLLVNSVRCAVILFYNYT 349


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 332 NNNTEKRNLGLTLVIFCSILMIFLA 406
           ++ TEK NLG+T ++  SILM+ ++
Sbjct: 296 DDRTEKINLGITTLLAMSILMLMVS 320


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 332 NNNTEKRNLGLTLVIFCSILMIFLA 406
           ++ TEK NLG+T ++  SILM+ ++
Sbjct: 296 DDRTEKINLGITTLLAMSILMLMVS 320


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 332 NNNTEKRNLGLTLVIFCSILMIFLA 406
           ++ TEK NLG+T ++  SILM+ ++
Sbjct: 296 DDRTEKINLGITTLLAMSILMLMVS 320


>AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical
           protein Y38F1A.8 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 474 ALTYPCLFLCTPTTSNIVNIKCNARNIINIEQNITKVKPKL 352
           +L Y   +   P T   + IK   RN+  +++++TK+ P L
Sbjct: 257 SLFYSIAYFEFPKTRITIGIKSVQRNLNELDKSVTKMAPAL 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,675
Number of Sequences: 27780
Number of extensions: 225718
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)