Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D08
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    31   0.53 
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ...    28   2.8  
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ...    28   2.8  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    28   3.8  
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER...    27   5.0  
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP...    27   6.6  
At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family...    27   6.6  
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su...    27   6.6  
At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ...    27   6.6  
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.7  
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    27   8.7  

>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 332 NNNTEKRNLGLTLVIFCSILMIFLALHLIFTI 427
           N  T K  L LTL++ CSI  +FL L+  FTI
Sbjct: 27  NRETVKLTL-LTLLLLCSICFLFLTLNFPFTI 57


>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 152 EAQPVNVVTSSKYYDSYTCCGIFPLKTGCLIIGYY 256
           ++ P+NVV+++ YY +Y      PL T CL  G Y
Sbjct: 170 DSGPINVVSATPYYSTY------PLITDCLKSGLY 198


>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 152 EAQPVNVVTSSKYYDSYTCCGIFPLKTGCLIIGYY 256
           ++ P+NVV+++ YY +Y      PL T CL  G Y
Sbjct: 170 DSGPINVVSATPYYSTY------PLITDCLKSGLY 198


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 104 FLLHCVYGRSLNSIYVSLPS*CTP 33
           FL HC +  +L S+Y  +P  C P
Sbjct: 377 FLTHCGWNSTLESLYAGVPMICWP 400


>At4g05310.1 68417.m00809 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 415

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 86  IHNGEGTATENRRAPPPPYVSVE 154
           IHN +    +  ++PP P++SVE
Sbjct: 79  IHNNDDQIPQTEQSPPAPWISVE 101


>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
           V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
           kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00137: ATP synthase
           subunit C
          Length = 180

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 173 VTSSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVC 277
           V SSK YD+ +    + +    +I+G+ NLV  +C
Sbjct: 94  VPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLC 128


>At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family
           protein contains QXW lectin repeat domain, Pfam:PF00652
          Length = 317

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 83  HIHNGEGTATENRRA--PPPPYVSVEAQPVNVVTSSKYYDSY 202
           H H+      ++R++   PPP+V    QP  +  S  ++D Y
Sbjct: 8   HRHHQRDDGEDDRQSFGVPPPHVDAPPQPHGLYQSQPHFDPY 49


>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
           subunit family protein similar to SP|P23968 Vacuolar ATP
           synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00137: ATP synthase subunit C
          Length = 178

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 173 VTSSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVC 277
           V SSK YD+ +    + +    +I+G+ NLV  +C
Sbjct: 92  VPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLC 126


>At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:1944371; contains GB:L22347
          Length = 372

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 374 IFCSILMIFLALHLIFTIL 430
           IF  +L++FL+LH +FT L
Sbjct: 6   IFLYLLIVFLSLHFVFTTL 24


>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 104 FLLHCVYGRSLNSIYVSLPS*CTPLNNHYYT 12
           F  HC +   L S++  LP  C PL    +T
Sbjct: 366 FFTHCGWNSILESVWCGLPLLCYPLLTDQFT 396


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 107 ATENRRAPPPPYVSVEAQPVNVVTSS 184
           A  N+ +P PP ++VE+ PVN  ++S
Sbjct: 55  ACRNQTSPFPPSLTVESTPVNANSAS 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,265
Number of Sequences: 28952
Number of extensions: 203983
Number of successful extensions: 900
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)