Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D07
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.7  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   3.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.0  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +1

Query: 187 PYSTLIVVAIADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSIW 366
           P   L++     Y Y + K +    F   +  +   ++  ++VL  T+ Y  +K N+S+W
Sbjct: 18  PNIYLLISGCLQYFYEVRKRSHYFHFRRFWTIWLKSLV--IMVLLFTHIYDCYKTNESVW 75

Query: 367 S 369
           +
Sbjct: 76  N 76


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 202 IVVAIADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLV 315
           ++ A+  Y  + + L LV  +DH F+  Y+  IFL +V
Sbjct: 362 LMSALVKYNMTEMILPLVKQYDHKFRNLYSPNIFLSIV 399


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 YPYSTLIVVAIADYCYSLIKLNLVLLFDHVFKKYYNK 294
           Y YS L +VA+  YC+      L +  D V +KY +K
Sbjct: 119 YTYSGLFLVAVNPYCH------LPIYGDDVVRKYQSK 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,539
Number of Sequences: 5004
Number of extensions: 31801
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)