Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D07
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0204 + 26354319-26356967                                         34   0.11 
01_06_0532 + 30048824-30050296                                         29   4.0  
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067           28   7.0  

>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 58  NKLGLSTCAILYKVSSKPSNWVTKCHHLQWRVSF*ETFLL*KYPYSTLIVVA-IADYCYS 234
           + L L    ++  +S+   N   KCHH++W      + L   +P + +I+ A I+ YC++
Sbjct: 495 HSLALKLGLLVDFISASLVNMYAKCHHIEWASQLFSSTL---FPRNLVIINAMISGYCWN 551

Query: 235 LIKLNLVLLF 264
            +    +LLF
Sbjct: 552 SLPQKALLLF 561


>01_06_0532 + 30048824-30050296
          Length = 490

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 217 ADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSIW 366
           A++  SL + N    F H+F + +  I+   ++LF  + Y + + N  I+
Sbjct: 362 ANFVASLFRANFCTQFWHLFLRCHRNIVEKHVILFGEHPYTLVQKNHGIY 411


>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
          Length = 472

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 250 LVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSIWSGM 375
           LV LF+ VF   + KI  L++      +  + +PN  IWS +
Sbjct: 378 LVGLFNRVFGVVFKKISLLMVYYISLGKNDLREPNKVIWSSL 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,987
Number of Sequences: 37544
Number of extensions: 147072
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)