Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D07
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_924| Best HMM Match : SNF (HMM E-Value=0.14)                        29   4.1  
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)                 28   7.2  
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   9.5  

>SB_924| Best HMM Match : SNF (HMM E-Value=0.14)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 202 IVVAIADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSIWSGMFY 381
           +V+ +    ++++ L LV++F  V          +LLVL   +   +     ++WSG+ Y
Sbjct: 298 MVLLVLVTIFTMVLLVLVIIFTMVLLVLVTTFTMVLLVLVTIFTMAIIVAQLALWSGISY 357

Query: 382 S 384
           +
Sbjct: 358 N 358


>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 229 YSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKP 351
           Y+++K  L ++F       Y K+    L+ +  Y Y  F+P
Sbjct: 38  YNMLKSTLTVIFSSFTLFCYGKLALKNLITYPKYSYTTFEP 78


>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
          Length = 956

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +1

Query: 205 VVAIADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSIWSGM 375
           VV +      L K   V    HVFKKY  K I  L  L E  +YK      +IW GM
Sbjct: 191 VVRLIKEIMKLFKRKEVYQNFHVFKKYQEKFITALSTLIEG-EYK------AIWRGM 240


>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 409 N*NCKKYRVNKTCLTKLNH 353
           N NC KYRVNK  +   NH
Sbjct: 391 NSNCVKYRVNKVIIISPNH 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191,540
Number of Sequences: 59808
Number of extensions: 200018
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)