Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D07
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   2.7  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     27   8.4  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 247 NLVLLFDHVFKKYYNKIIFLLLVLFETY 330
           +L  LF+++FK +Y+KI+FLL      Y
Sbjct: 23  SLKFLFENLFKNHYDKIVFLLATFNTLY 50


>AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical
           protein F23C8.6 protein.
          Length = 205

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +2

Query: 506 EHLFNLKFAVKELERNS 556
           +HLF+LKFA K+LE+N+
Sbjct: 12  KHLFDLKFAAKQLEKNA 28


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 84  YFVQSFIKTVKLGNEMSSSAMESILLRNFFVVKISIFNSNC 206
           +F + F +T+   +E S +A     L+ FF +KI IF+ NC
Sbjct: 439 HFSEFFFETIDFEHENSQNA-----LKKFFSLKIDIFDLNC 474


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +1

Query: 193  STLIVVAIADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSI 363
            + L+VVAIA     L+KL L ++  +  +     ++  +++L+ T  + VF P DS+
Sbjct: 1032 TVLVVVAIAVLVLVLVKLYLRVVKGN--QSLGISLLIGIIILYSTAFFFVFDPTDSV 1086


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
            F35H10.10 protein.
          Length = 1404

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +1

Query: 193  STLIVVAIADYCYSLIKLNLVLLFDHVFKKYYNKIIFLLLVLFETYQYKVFKPNDSI 363
            + L+VVAIA     L+KL L ++  +  +     ++  +++L+ T  + VF P DS+
Sbjct: 1032 TVLVVVAIAVLVLVLVKLYLRVVKGN--QSLGISLLIGIIILYSTAFFFVFDPTDSV 1086


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,424
Number of Sequences: 27780
Number of extensions: 171372
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)