Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D07
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66930.2 68418.m08437 expressed protein similar to unknown pr...    28   5.9  
At5g66930.1 68418.m08436 expressed protein similar to unknown pr...    28   5.9  
At1g69860.1 68414.m08040 proton-dependent oligopeptide transport...    28   5.9  
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi...    27   7.8  

>At5g66930.2 68418.m08437 expressed protein similar to unknown
           protein (pir||T38383)
          Length = 215

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 79  CAILYKVSSKPSNWVTKCHHLQW 147
           C   Y+V SK  +W TK   L W
Sbjct: 86  CLSFYEVKSKQPSWFTKIERLYW 108


>At5g66930.1 68418.m08436 expressed protein similar to unknown
           protein (pir||T38383)
          Length = 157

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 79  CAILYKVSSKPSNWVTKCHHLQW 147
           C   Y+V SK  +W TK   L W
Sbjct: 86  CLSFYEVKSKQPSWFTKIERLYW 108


>At1g69860.1 68414.m08040 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 301 FLLLVLFETYQYKVF-KPNDSIWSGMF 378
           F LL+LF   +Y VF KP  S++SG+F
Sbjct: 222 FALLLLFVGTRYYVFVKPEGSVFSGVF 248


>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
           protein
          Length = 528

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 417 ITIKPKILYELCLSYHSYNV*HKMLNSV--KQNICLI 521
           +T KP+ L ++CL+ +   V  KM+ +V  KQ I L+
Sbjct: 286 LTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALV 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,362,498
Number of Sequences: 28952
Number of extensions: 144057
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)