Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D06
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   4.4  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    28   5.8  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   7.7  

>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 368 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 499
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +1

Query: 7   EDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP 186
           + I F+SY +     +P WW +E   N      EIY        +  Y++RL    G+  
Sbjct: 281 QSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKS 338

Query: 187 -EFSWYSPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFEKTFVQ 345
            E +  S  K G  P++      +   +P+   + S K + E +R      KT++Q
Sbjct: 339 LEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 313 TVLLRSSLRCVDCSCPAFERMG 248
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,330,393
Number of Sequences: 37544
Number of extensions: 356750
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)