Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D06
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   3.4  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   3.4  
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          28   5.9  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 500  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 592
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 214  TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 384
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 385  IDFHD 399
             D H+
Sbjct: 4771 RDVHE 4775


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 406 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 275
           P H  NQ  C    IC+  G   KS  KCP    L  S  RC  C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +1

Query: 349  LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 480
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 89  LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 214
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 479 NDLMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT 652
           ++L   +L   ++ HLN  HST T S    LT T   + TL   +++T  + T+THS++T
Sbjct: 25  SNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTLT---YSTL---THLTITYSTITHSTLT 78


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
 Frame = +1

Query: 67  SSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 246
           S ER     ++RG  Y   Y++   R Y      G     E  +    K GY       Y
Sbjct: 124 SYERSYERSYKRG--YERSYERSYERGYKRSYERGNKRSYERGYKRGYKRGYERGYERSY 181

Query: 247 FPFAQRP--DNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAI--N 414
               +R    +Y    V++YE   +   +++++ +S ++    SY +  +   E++   +
Sbjct: 182 KRSYERSYERSYKRSYVRSYER-SYKRSYKRSYKRSYKRSYKRSYKRSYERSYERSYKRS 240

Query: 415 FVGNYWQENADLYEEEVTKDYQRSYE 492
           +  +Y +     YE    + Y+RSYE
Sbjct: 241 YKRSYERSYERSYERSYERSYERSYE 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,666,632
Number of Sequences: 59808
Number of extensions: 440790
Number of successful extensions: 1256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)