Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D05
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 43 7e-05
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 31 0.42
11_01_0470 + 3645010-3647686,3647804-3648168 30 0.74
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 3.0
07_01_0791 - 6165069-6165165,6165288-6165346,6165379-6165432,616... 27 3.9
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 27 3.9
08_02_1292 + 25943074-25943643 27 6.9
07_03_0604 + 19903654-19904598 27 6.9
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 27 6.9
05_05_0220 + 23380290-23381581,23381997-23383458 26 9.1
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 43.2 bits (97), Expect = 7e-05
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 179 KNDEASSNLLN-VPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILA 355
K D AS L + + ++V PT F AL DNY+ + E VT ++ E+ +I I
Sbjct: 252 KGDMASETLFSWLGDDVLRKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIAR 311
Query: 356 TGPIRTLMNFL 388
T PI+ L +L
Sbjct: 312 TAPIKYLHRYL 322
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 30.7 bits (66), Expect = 0.42
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 119 INNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFV 256
+N A+N +Q +Q + P D SN++N + T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 29.9 bits (64), Expect = 0.74
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 98 EEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLL-NVPENVWSGPTIRPFVALFDN 271
EE+F + N + YI SL GK + +S ++++L ++PE ++ PTIR F+N
Sbjct: 442 EELF-LESNQLYGYIPSSL-GKLNVLSVLSMSNNSLHGSIPEEIFRIPTIRKISLSFNN 498
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 62 DSTTDDDLLRISEEMFNADINNAFNYIQ 145
D T D L +S EM+ D NN +Y+Q
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQ 700
>07_01_0791 -
6165069-6165165,6165288-6165346,6165379-6165432,
6165475-6165516
Length = 83
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 33 ATMTCYVKYRILRRTTTCYGLARRCSMRI 119
AT+T Y ++ LR+T + A RCSM +
Sbjct: 49 ATVTNYGEFNSLRKTVVGWQAASRCSMAV 77
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 140 IQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNE 316
++ L+G T P E S+ VP GP P + DN + IRPE + +E
Sbjct: 440 LEDDLKGATGPKKSETEKSAT---VPLKDGDGPLPPPKPEIPDNEFEKRIRPEVIPASE 495
>08_02_1292 + 25943074-25943643
Length = 189
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 62 DSTTDDDLLRISEEMFNADINNAFNYIQVSLQGK 163
D+TTD+D++ ++ + + DI I + QG+
Sbjct: 156 DTTTDEDVMAAADRLLSMDIEEVAALIAIVQQGE 189
>07_03_0604 + 19903654-19904598
Length = 314
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 197 SNLLNVPENVWSGPTIRPFVALFDNYHKNVIRP 295
S LLN+ + +WS + + NY + ++RP
Sbjct: 195 SGLLNLIDGLWSATSDERVIVFTTNYKERLLRP 227
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 101 EMFNADINNAFNYIQVSLQGKTSPMSK--NDEASSNLL--NVPENVWSGPTIRPFVALFD 268
++ D++N N + S+ M + N + SSN L ++P+ ++S P++ + L D
Sbjct: 447 QLLTLDLSN--NQLNGSIPKSLGSMERLTNLDLSSNRLVESIPDVIFSLPSLTDSLLLSD 504
Query: 269 NYHKNVIRPE 298
NY + P+
Sbjct: 505 NYLSGALPPK 514
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 122 NNAFNYIQVSLQGKTSPMSKNDEASSNLLN--VPENVWSGPTIR 247
N+ Y+ +L S +S N S NLL+ VP+ +WS P++R
Sbjct: 124 NSLSGYLPAALASCGSLVSLN--LSGNLLSGPVPDGIWSLPSLR 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,493,012
Number of Sequences: 37544
Number of extensions: 163496
Number of successful extensions: 428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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