Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D05
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    36   0.008
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    31   0.21 
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      30   0.49 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    30   0.49 
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    29   0.86 
Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z81562-1|CAB04560.2|  367|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AF106574-3|AAC78159.2|  427|Caenorhabditis elegans Hypothetical ...    27   3.5  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AC087232-7|AAK09082.1|  298|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
 Frame = +2

Query: 35  YDDMLRQVQDSTTDDDLLRISEEM--FNADIN-NAFNY-IQVSLQGKTSPMSKNDEASSN 202
           +   +RQ  D T+D+D+ RI  EM   N  ++   FN+ ++++L G           S+ 
Sbjct: 505 FSSFIRQEGDKTSDEDIYRICSEMRRTNGKVHKKMFNFELELTLAGSNKSKEYQSHGSNL 564

Query: 203 LLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRTLM 379
            LN    +     I  + A  +  +KNVI   FV P        +IN    TG  R +M
Sbjct: 565 TLNSERVIHEAMEIPIYQASLNKSYKNVI---FVYPK-------HINLSNRTGNARNIM 613


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +2

Query: 53  QVQDSTTDDDLLRISEEMFNADI--NNAFNYIQVSLQGKTSPMSKNDEASSNLLN 211
           Q+++   + D +++S E  +  +  NN  +++ ++  G++SP+  ND+ S + LN
Sbjct: 343 QMEELLENQDFMKLSIEDLSTSLAMNNVLSFLSITFYGESSPL-PNDDISISFLN 396


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 32   SYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVS 151
            +YDD+LR +++   DD+ L    +   A+++NA   +Q S
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQNS 1607


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 32   SYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVS 151
            +YDD+LR +++   DD+ L    +   A+++NA   +Q S
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQNS 1607


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 236 PTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRTL 376
           PT    VALFDN H+    PE+   N       +++  LA  P  T+
Sbjct: 327 PTRSKSVALFDNKHQMSSIPEYSMLNTNLANLEHLDLELANSPCTTV 373


>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 89  RISEEMFNADINNAFNYIQVSLQGKTSP 172
           R+S+E+   DI+N +N++Q S Q K  P
Sbjct: 58  RVSKELSFEDIHNEYNFMQFSEQLKAMP 85


>Z81562-1|CAB04560.2|  367|Caenorhabditis elegans Hypothetical
           protein K03D7.2 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 355 GEYSVDVRCLLCFFVGRDEFWSDHIFMIVV 266
           G  S+ V C + +F+G   ++SDH+  + +
Sbjct: 13  GIESIRVFCAIAYFMGTFNYYSDHVHFVAL 42


>AF106574-3|AAC78159.2|  427|Caenorhabditis elegans Hypothetical
           protein E02D9.1a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 26  KKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNL 205
           K  Y+D+   +      DD  + SE + N D N     I  ++       SKNDE+S N 
Sbjct: 99  KLKYNDVDGAILKVRGADDFEKFSERLENTDENEEIVLILENIS------SKNDESSGNS 152

Query: 206 LNV 214
            NV
Sbjct: 153 QNV 155


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 32  SYDDMLRQVQDSTTDDDLLRISEEMFNAD-INNAFNYIQVSLQGKTSPMSKNDEASSNLL 208
           SYD  L  ++DS+  + +L   E+  +A+ I+   N+ QV    +T+     +E S    
Sbjct: 548 SYDTDLIDIEDSSAHETILPDQEKEEDAEIISTTQNFSQVLHVAETTTPDHVEEVSLKAT 607

Query: 209 -NVPE 220
            NVPE
Sbjct: 608 NNVPE 612


>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/55 (21%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 53  QVQDSTTDDDLLRISEEMFNADI--NNAFNYIQVSLQGKTSPMSKNDEASSNLLN 211
           Q+++   + D +++  E  +  +  NN  +++ +++ GK+S +  ND+ S+  L+
Sbjct: 53  QMEELLENQDFMKLFIENLSTSLAMNNVLSFLSIAMFGKSSSL-LNDDISNTFLS 106


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 304 HAQRRNRA-DNVHQHYTRHRTYSYPYEFP 387
           H  RR+R  D++H+H+ R R      +FP
Sbjct: 15  HQGRRDRVEDHLHEHFIRERNLHQRPQFP 43


>AC087232-7|AAK09082.1|  298|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.8 protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 98  EEMFNADINNAFNYIQVSL 154
           E++FNADIN    YI +SL
Sbjct: 80  EKLFNADINTRREYIPLSL 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,186,494
Number of Sequences: 27780
Number of extensions: 147494
Number of successful extensions: 667
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)