Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D05
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    31   0.20 
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    31   0.36 
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    31   0.36 
At4g28480.1 68417.m04074 DNAJ heat shock family protein contains...    30   0.47 
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    29   1.4  
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    29   1.4  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    28   2.5  
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-...    28   2.5  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    27   3.3  
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    27   4.4  
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi...    26   7.6  
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote...    26   7.6  

>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 122 NNAFNYIQVSLQGKTSPMSKNDEASSNLLN--VPENVWSGPTIRPFVALFDN 271
           NN F   Q+     T+P+ +    S+N  +  +PEN+W  P ++ F A F N
Sbjct: 450 NNRFTD-QIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSN 500


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 62  DSTTDDDLLRISEEMFNADINNAFNYIQ 145
           D +T  D L +S EMF  D NN  +Y+Q
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQ 660


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 62  DSTTDDDLLRISEEMFNADINNAFNYIQ 145
           D +T  D L +S EMF  D NN  +Y+Q
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQ 660


>At4g28480.1 68417.m04074 DNAJ heat shock family protein contains
           Pfam profile PF00226: DnaJ domain; ; similar to DnaJ
           homolog subfamily B member 1 (Heat shock 40 kDa protein
           1) (Heat shock protein 40) (HSP40) (DnaJ protein homolog
           1) (HDJ-1) (Swiss-Prot:P25685) [Homo sapiens] and
           (Swiss-Prot:Q9QYJ3) [Mus musculus]
          Length = 348

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 83  LLRISEEMFNADINNAFNYIQVSLQGKTSPMSKND-EASSNLLNVPENVWSGPTIRPFVA 259
           +L++     + D+  A+  + +      +P +K D EA    ++   +V S P  R   A
Sbjct: 8   VLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR---A 64

Query: 260 LFDNYHKNVIRPEFVTPNEETEQTTYINT 346
           ++D Y +  ++     PN  T   +Y +T
Sbjct: 65  VYDQYGEEGLKGNVPPPNAATSGASYFST 93


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 23/91 (25%), Positives = 41/91 (45%)
 Frame = +2

Query: 38  DDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVP 217
           D  LR++  +T +  +L I +     D+ N    I+  ++GK    S+     S LLN  
Sbjct: 292 DSDLRRLLLATRNRSILVIEDIDCAVDLPNR---IEQPVEGKNRGESQGPLTLSGLLNFI 348

Query: 218 ENVWSGPTIRPFVALFDNYHKNVIRPEFVTP 310
           + +WS       + +F   HK+ + P  + P
Sbjct: 349 DGLWSSCGDERII-IFTTNHKDRLDPALLRP 378


>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 41  DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 160
           ++L Q +D+  DD    ++  + NAD+ N+FN +  + +G
Sbjct: 34  EILLQFKDNINDDPYNSLASWVSNADLCNSFNGVSCNQEG 73


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 239 TIRPFVALFDNYHKNVIRPEFVTP-NEETEQTTYINTIL 352
           T++P++ LF  +  N+ R +FV   N   ++T Y   +L
Sbjct: 579 TLKPYLTLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLL 617


>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
           / HD-ZIP transcription factor 13 identical to homeobox
           gene 13 protein (GP:12325190) [Arabidopsis thaliana]
          Length = 294

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +2

Query: 26  KKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQ---VSLQGKT--SPMSKNDE 190
           +K YD + RQ      ++DLL+   +   A+I    N  Q   ++L  +T  S  +++D 
Sbjct: 143 EKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQTESINLNKETEGSCSNRSDN 202

Query: 191 ASSNL 205
           +S NL
Sbjct: 203 SSDNL 207


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = +2

Query: 14  DYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQGKTSPMS-KNDE 190
           +Y ++      L++   +  D     +  +M +A + N   + ++++ G  S  + +N E
Sbjct: 207 NYKEEPDLSAALKRCFPTGIDIYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQE 266

Query: 191 ASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTI 349
              NL N+   ++    I+ F A+FD Y K     +FV P+ +  + TY+  +
Sbjct: 267 GVHNLSNI---IYKRIRIQGF-AVFDFYEKYSKFLDFVLPHIKEGKITYVEDV 315


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
            PF03637: Mob1/phocein family; contains Pfam F00560:
            Leucine Rich Repeats; contains TIGRFAMS profile
            TIGR01612: reticulocyte binding protein; hypothetical
            protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 266  DNYHKNVIRPEFVTPNEETEQTTYINTIL 352
            D  HKN I PE  TP + T+ T  I  I+
Sbjct: 1160 DQPHKNTIGPETQTPTQPTKATDTIFRIV 1188


>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 38  DDMLRQVQDSTTDDDLLRISEEM 106
           D+ML+ V D   DDD +R+SEE+
Sbjct: 506 DEMLKIV-DEMLDDDTVRVSEEL 527


>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 882

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 41  DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 160
           D+L Q + S +DD    ++  + + D+ N+FN I  + QG
Sbjct: 28  DILLQFKGSISDDPYNSLASWVSDGDLCNSFNGITCNPQG 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,573,974
Number of Sequences: 28952
Number of extensions: 132267
Number of successful extensions: 418
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)