Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D02
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    82   4e-17
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   2.5  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    26   3.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   4.5  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   4.5  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    25   7.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.8  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   7.8  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   7.8  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 46/121 (38%), Positives = 64/121 (52%)
 Frame = +1

Query: 1   FDLAQSNSEHSRHWFFKGKLILDGKEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGF 180
           F   Q NSEH RH  F     +DG++ + SL +M+ +T   +    +  + DN++  +G 
Sbjct: 214 FMFGQVNSEHCRHKIFNADWTIDGEKKDYSLFKMIRNTHLKNPQYTISAYSDNAAVFEGN 273

Query: 181 KHTKVRPTNVKAPSQVIQEVVESDIIFTAETHNMPTAVAPFSGATTGTGGRIRDVQGVGR 360
             T   P N      +  E VE   +   ETHN PTAV+PF GA TG+GG IRD   VG+
Sbjct: 274 SGTLFAPVN--GIWSMKDEPVE--FLGKVETHNHPTAVSPFPGAATGSGGEIRDEGAVGQ 329

Query: 361 G 363
           G
Sbjct: 330 G 330


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 79  INESLIEMVASTQKTSNDNNVIKFGDNSSAIKG 177
           I + L+E+V  T    N N++  F DN + IKG
Sbjct: 372 ITQKLVELVHETIVMPNMNDLAFFIDNEAPIKG 404


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 106 ASTQKTSNDNNVIKFGDNSSAIKGFKHTKVRPTNVKAPSQVIQE 237
           A+ Q ++  +      +NSS   G +H K+    V  P   IQ+
Sbjct: 13  ANAQLSNTSSTESSSSNNSSTASGSRHVKIESNRVSLPPLKIQK 56


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 446 PGMSNVWLWTAITLDGTSPSCPNSARGLPLPTP 348
           P M+N+ L   +TLD  SPS  NSA  +   +P
Sbjct: 141 PSMNNLHLHI-MTLDHVSPSLKNSAHYISFTSP 172


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 193 VRPTNVKAPSQVIQEVVESDIIFTAET 273
           V  +N K+P Q  +E  +SDI F  ET
Sbjct: 28  VTVSNAKSPEQASEESDDSDIEFIIET 54


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 223 QVIQEVVESDIIFTAETHNMPTAVAPFSGATTGTGGRIRDVQGVGRGR 366
           +VI ++V   I +  E HN   A  P   A  G G  I       RGR
Sbjct: 272 RVIADMVREKIRYFREPHNEKKAKIPIPFAIVGAGAPIEHDGKCIRGR 319


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +1

Query: 70  GKEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGFKHTKVRPTNVKAPSQVIQEVVES 249
           GK    SLI +  S  ++SN+ + ++  ++S++     + + R  N    +  I + V+S
Sbjct: 232 GKPDLSSLIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRNA---ANRITDYVDS 288

Query: 250 DI 255
           D+
Sbjct: 289 DL 290


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 70  GKEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGFKHTK 192
           GK++   ++ +V S  + S +   +   DN +  K F+ T+
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTE 857


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 392 PSCPNSARGLPLPTP*TSLIRPPVPVVAPLNG 297
           P   N+A  +PLP    S   PP P  AP  G
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 401 GTSPS--CPNSARGLPLPTP*TSLIRPPVPVVAPLNGAT 291
           G SP+   P SA   P     TS+  PPVP V PL GAT
Sbjct: 213 GFSPATPAPTSAANTPATIAATSI--PPVPNV-PLVGAT 248


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 383 PNSARGLPLPTP*TSLIRPPVPVVAPLNG 297
           PN A G+P P P      P +  + P NG
Sbjct: 212 PNFAPGMPAPGPTAVSASPSLQSMPPTNG 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,398
Number of Sequences: 5004
Number of extensions: 33543
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)