Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_D02
(475 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42) 163 5e-41
SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27) 163 5e-41
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 38 0.003
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 29 1.5
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 28 3.4
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 4.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
Length = 1371
Score = 163 bits (397), Expect = 5e-41
Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 FDLAQSNSEHSRHWFFKGKLILDGKEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGF 180
FDLAQSNSEHSRHWFF G+L++DG+EI++SL+ MV TQ TSNDNNVIKF DNSS+IKG+
Sbjct: 237 FDLAQSNSEHSRHWFFCGRLVVDGQEIDKSLMRMVKDTQITSNDNNVIKFSDNSSSIKGY 296
Query: 181 KHTKVRPTNVKAPSQV-IQEVVESDIIFTAETHNMPTAVAPFSGATTGTGGRIRDVQGVG 357
+ + P S+ + E IIF+AETHN PT VAPF GATTGTGGRIRDVQ G
Sbjct: 297 QVPLLIPDEPATASKFHLSEDTTRHIIFSAETHNFPTGVAPFPGATTGTGGRIRDVQAAG 356
Query: 358 RG 363
RG
Sbjct: 357 RG 358
>SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)
Length = 665
Score = 163 bits (397), Expect = 5e-41
Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 FDLAQSNSEHSRHWFFKGKLILDGKEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGF 180
FDLAQSNSEHSRHWFF G+L++DG+EI++SL+ MV TQ TSNDNNVIKF DNSS+IKG+
Sbjct: 237 FDLAQSNSEHSRHWFFCGRLVVDGQEIDKSLMRMVKDTQITSNDNNVIKFSDNSSSIKGY 296
Query: 181 KHTKVRPTNVKAPSQV-IQEVVESDIIFTAETHNMPTAVAPFSGATTGTGGRIRDVQGVG 357
+ + P S+ + E IIF+AETHN PT VAPF GATTGTGGRIRDVQ G
Sbjct: 297 QVPLLIPDEPATASKFHLSEDTTRHIIFSAETHNFPTGVAPFPGATTGTGGRIRDVQAAG 356
Query: 358 RG 363
RG
Sbjct: 357 RG 358
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +1
Query: 394 EVPSNVIAVHSQTLDIPGCPVGWSELW 474
EV S+V+AVHSQ++ +P CP GWS LW
Sbjct: 1679 EVSSHVMAVHSQSITVPSCPSGWSPLW 1705
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +1
Query: 394 EVPSNVIAVHSQTLDIPGCPVGWSELW 474
EV S+V+AVHSQ++ +P CP GWS LW
Sbjct: 1722 EVSSHVMAVHSQSITVPSCPSGWSPLW 1748
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 409 VIAVHSQTLDIPGCPVGWSELW 474
V+AVHSQ+ +P CP GWS LW
Sbjct: 36 VMAVHSQSTTLPTCPGGWSSLW 57
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 76 EINESLIEMVASTQKTSNDNNVIKFGD---NSSAIKGFKHTKVRPTNVKAP 219
+I S IE QK DN+V + D SS IKGF+H +P + P
Sbjct: 711 DIGPSRIEDTNILQKLMRDNDVTRDNDVTPASSRIKGFEHNAPQPIIDEGP 761
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 419 TAITLDGTSPSCPNSARGLPLPTP*TSLIRPPVPVVAP 306
T T ++ CPN+A G +P P +S PVP AP
Sbjct: 1107 TTTTTPNSNEQCPNTAAG-SVPPPPSSTANAPVPDDAP 1143
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 262 TAETHNMPTAVAPFSGATTGTGGRIRDVQGVGRGRPRAE 378
T+ PTAV S AT+G GG R +G G G AE
Sbjct: 556 TSGVSTAPTAVPTTSSATSGGGGGRRVKKGQGGGGRGAE 594
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 43 FFKGKLILDG-KEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGFKH--TKVRPTNVK 213
F +G L D K + E + Q + NDN+ FG +S+AI + T P ++
Sbjct: 490 FREGSLGDDSHKTVKEKCPNYITPAQHSKNDNHSPSFGTSSAAICNLQGSITADSPCSLS 549
Query: 214 APS 222
APS
Sbjct: 550 APS 552
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 401 GTSP--SCPNSARGLPLPTP*TSLIRP-PVPVVAP 306
GT+P + P+ R LP+PTP ++ P P P+ P
Sbjct: 82 GTTPRKNIPDQERSLPIPTPRRNIPYPQPKPIPTP 116
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 398 TSPSCPNSARGLPLPTP*TSLIRPPVPVVAP 306
T P+ P LP P P T + PP+P + P
Sbjct: 947 TRPTPPPPTSALPPPIPATQVPPPPLPPLPP 977
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,547
Number of Sequences: 59808
Number of extensions: 267440
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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