Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_D02
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74260.1 68414.m08600 AIR synthase-related family protein con...   141   2e-34
At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ...    30   0.92 
At4g17110.1 68417.m02577 expressed protein ; expression supporte...    29   1.2  
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa...    29   1.2  
At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger) fa...    27   4.9  

>At1g74260.1 68414.m08600 AIR synthase-related family protein
           contains Pfam profiles: PF00586 AIR synthase related
           protein, N-terminal domain, PF02769 AIR synthase related
           protein, C-terminal domain
          Length = 1387

 Score =  141 bits (342), Expect = 2e-34
 Identities = 65/121 (53%), Positives = 87/121 (71%)
 Frame = +1

Query: 1   FDLAQSNSEHSRHWFFKGKLILDGKEINESLIEMVASTQKTSNDNNVIKFGDNSSAIKGF 180
           FD+AQSNSEHSRHWFF G +++DGK +++SL+++V ST + + +N+VI F DNSSAI+GF
Sbjct: 285 FDIAQSNSEHSRHWFFAGNMVIDGKPMDKSLMQIVKSTWEANRNNSVIGFKDNSSAIRGF 344

Query: 181 KHTKVRPTNVKAPSQVIQEVVESDIIFTAETHNMPTAVAPFSGATTGTGGRIRDVQGVGR 360
              ++RP    +   +     + DI+FTAETHN P AVAP+ GA TG GGRIRD    GR
Sbjct: 345 LVNQLRPLLPGSVCLLDVSARDLDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGR 404

Query: 361 G 363
           G
Sbjct: 405 G 405


>At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 189

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 307 GATTGTGGRIRDVQGVGRGRPRAEFG---HEGEVPSNVIAV 420
           G+  G GGR    +G GRGR R  FG   ++   PS V+ V
Sbjct: 8   GSFRGRGGRDNGGRGRGRGRGRGRFGGGNYDEGPPSEVVEV 48


>At4g17110.1 68417.m02577 expressed protein ; expression supported
           by MPSS
          Length = 335

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 376 EFGHEGEVPSNVIAVHSQTLDIPGCPVGWSELW 474
           +  H G  P NV AV++ T  +   PVG+  +W
Sbjct: 186 DVAHVGSHPPNVAAVYNNTNGVFALPVGYDLVW 218


>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 214

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 413 ITLDGTSPSCPNSARGLPLPTP*TSLIRPPVPVVAPLN 300
           + L+G+ P C NS    PLPTP ++ +  P+  V PL+
Sbjct: 170 LKLNGSCPVCRNS----PLPTPTSTPLSTPLSEVVPLS 203


>At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 212

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 413 ITLDGTSPSCPNSARGLPLPTP*TSLIRPPVPVVAPLN 300
           + L+G+ P C NS    PLPTP ++    P+  V PL+
Sbjct: 168 LKLNGSCPVCRNS----PLPTPQSTPQSTPLSEVVPLS 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,633
Number of Sequences: 28952
Number of extensions: 186516
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)