Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C23
         (126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    42   9e-06
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    42   9e-06
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    42   9e-06

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 42.3 bits (95), Expect = 9e-06
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 42.3 bits (95), Expect = 9e-06
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 42.3 bits (95), Expect = 9e-06
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,202
Number of Sequences: 5004
Number of extensions: 4643
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)