Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C23
(126 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0348 - 2607315-2607424,2608634-2609030 42 5e-05
06_01_0428 + 3055163-3055573 42 5e-05
06_01_0427 - 3054204-3054614 42 5e-05
06_01_0423 - 3039527-3039937 42 5e-05
06_01_0217 - 1644696-1645034,1645143-1645214 42 5e-05
05_04_0449 - 21355439-21355849 42 5e-05
04_04_0062 + 22437653-22437724,22437866-22437943,22438222-22438392 42 5e-05
04_03_0909 + 20748653-20749063 42 5e-05
03_03_0212 + 15479850-15479921,15479965-15480083,15480175-154802... 42 5e-05
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 42 5e-05
01_06_1456 + 37507156-37507566 42 5e-05
12_02_0047 - 12836779-12837189 35 0.008
12_02_0048 - 12852335-12852745 33 0.043
>11_01_0348 - 2607315-2607424,2608634-2609030
Length = 168
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>06_01_0428 + 3055163-3055573
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>06_01_0427 - 3054204-3054614
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>06_01_0423 - 3039527-3039937
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>06_01_0217 - 1644696-1645034,1645143-1645214
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>05_04_0449 - 21355439-21355849
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>04_04_0062 + 22437653-22437724,22437866-22437943,22438222-22438392
Length = 106
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>04_03_0909 + 20748653-20749063
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>03_03_0212 +
15479850-15479921,15479965-15480083,15480175-15480265,
15480363-15480533
Length = 150
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 66 MARTKQTARKSTGGKAPRK 84
>01_06_1456 + 37507156-37507566
Length = 136
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTARKSTGGKAPRK
Sbjct: 1 MARTKQTARKSTGGKAPRK 19
>12_02_0047 - 12836779-12837189
Length = 136
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTA+KST G PRK
Sbjct: 1 MARTKQTAKKSTAGNVPRK 19
>12_02_0048 - 12852335-12852745
Length = 136
Score = 32.7 bits (71), Expect = 0.043
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 69 MARTKQTARKSTGGKAPRK 125
MARTKQTA+KST PRK
Sbjct: 1 MARTKQTAKKSTASNVPRK 19
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,951
Number of Sequences: 37544
Number of extensions: 24333
Number of successful extensions: 52
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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