Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C23
         (126 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   3.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   5.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 96  YGLFALYVPLF 64
           YG++  +VPLF
Sbjct: 220 YGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 96  YGLFALYVPLF 64
           YG++  +VPLF
Sbjct: 96  YGIWVYFVPLF 106


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
          protein.
          Length = 486

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -3

Query: 67 IHFSELLKSINYIKLY 20
          +HF+ ++K IN+ + +
Sbjct: 1  MHFNNVIKYINFDRFF 16


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 55  ELLKSINYIKL 23
           ELLK  NY+K+
Sbjct: 160 ELLKHFNYMKV 170


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 126 VCEELYLL*IYGLFALYVPLFTSV 55
           VC+  +      L + Y+PLF  +
Sbjct: 196 VCQNFFYQIYATLGSFYIPLFVMI 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,118
Number of Sequences: 438
Number of extensions: 372
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)