Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C23
         (126 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65360.1 68418.m08221 histone H3 identical to histone H3 from...    42   4e-05
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M...    42   4e-05
At5g10400.1 68418.m01206 histone H3 identical to several histone...    42   4e-05
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from...    42   4e-05
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,...    42   4e-05
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,...    42   4e-05
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from...    42   4e-05
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from...    42   4e-05
At1g19890.1 68414.m02494 histone H3, putative similar to histone...    41   1e-04
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ...    39   4e-04
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit...    38   0.001
At1g13370.1 68414.m01554 histone H3, putative strong similarity ...    36   0.005
At5g12910.1 68418.m01481 histone H3, putative similar to histone...    33   0.020
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do...    27   1.7  

>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
           MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
           variant H3.3 Lycopersicon esculentum GI:1435157;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
           proteins, including Zea mays SP|P05203, Medicago sativa
           GI:166384, Encephalartos altensteinii SP|P08903, Pisum
           sativum SP|P02300; contains Pfam profile PF00125 Core
           histone H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
           minor Lolium temulentum SP|P11105, nearly identical to
           histone H3.2 Mus pahari GI:515005; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
           minor Lolium temulentum SP|P11105, nearly identical to
           histone H3.2 Mus pahari GI:515005; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGKAPRK
Sbjct: 1   MARTKQTARKSTGGKAPRK 19


>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
           from Chlamydomonas reinhardtii GI:571470, Volvox carteri
           SP|P08437, histone H3.2 minor from Lolium temulentum
           SP|P11105; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 137

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTARKSTGGK PRK
Sbjct: 1   MARTKQTARKSTGGKGPRK 19


>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
           from Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 139

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQTAR STGGKAPRK
Sbjct: 1   MARTKQTARISTGGKAPRK 19


>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
           to histone H3.2 SP|P11105 GI:417103 from Lolium
           temulentum, histone H3.2 from Mus pahari GI:515005;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPR 122
           MARTKQTARKS GGKAPR
Sbjct: 1   MARTKQTARKSHGGKAPR 18


>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
           Histone H3.2, minor Medicago sativa SP|P11105, histone
           H3 Rubus idaeus GI:10732809; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAPRK 125
           MARTKQ+ARKS GGKAP K
Sbjct: 1   MARTKQSARKSHGGKAPTK 19


>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
           from Mus musculus GI:51301, Gallus gallus GI:211859,
           Medicago sativa GI:166384, Pisum sativum SP|P02300;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 131

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 69  MARTKQTARKSTGGKAP 119
           MAR+ QTARK+TGGKAP
Sbjct: 1   MARSNQTARKATGGKAP 17


>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 91  AVCFVRAIIHFSELLKSINYIKLY*NW 11
           ++C   +++ F + +  I Y+KLY NW
Sbjct: 353 SLCLDYSVLAFRKAMSVIEYLKLYFNW 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,238
Number of Sequences: 28952
Number of extensions: 22428
Number of successful extensions: 54
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 12,070,560
effective HSP length: 22
effective length of database: 11,433,616
effective search space used: 217238704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)