Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C22
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   0.27 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    28   0.83 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   0.83 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   3.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   5.8  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   7.7  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   7.7  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 134 SLSAAAYGVLLTTLQIAMLSARDVGTEEDIAEALLMSI 247
           SL   +YG+L+  + +  + + D+G  +D+AE LL  +
Sbjct: 508 SLDDMSYGLLVFQVNLMAIMSMDMGLSKDVAEDLLQDL 545


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 55   YSSLLLFVCITFLVIVSSPQNGALADKLIGSCVWGAVNYTS 177
            Y SLLLF+C   +     P    LA    G  VWG   Y +
Sbjct: 1058 YHSLLLFLCSIAVFYYDGPNKDGLAS---GHWVWGTTLYAA 1095


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 60  FIIAVCLHHIFGDRFISAKWRSSGQAYRQLRMG 158
           F IA CLH + G +FI   W + G +   L++G
Sbjct: 135 FFIAQCLHILRGTKFI-IDWHNFGYSILALKLG 166


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 133 CPLERHFAEMKRSPKM 86
           CP+E+HF   K SPK+
Sbjct: 489 CPIEQHFIGAKGSPKI 504


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 85  TFLVIVSSPQNGALADKLIGSCVWGAVNYTSDC 183
           +FLV  S+  + ALA +L+  C+   VN+ S C
Sbjct: 499 SFLVAYSTFVSSALAVELLKFCLNSYVNFVSVC 531


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 152 YGVLLTTLQIAMLSARDVGTEEDIAEALL 238
           Y   LTTLQI  LS +++G    + E+ L
Sbjct: 115 YQYSLTTLQIQKLSRKEMGLAPSVIESHL 143


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 13   VKDQVFTIIKMVKNYSSLLLFVCITFLVIVSS-PQNGALA 129
            +K +  +++  +KNYSS L F+  T  V ++  P+N  LA
Sbjct: 882  IKSKSQSLLSFLKNYSSDLPFLFNTSKVFINEIPENLKLA 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,111
Number of Sequences: 5004
Number of extensions: 36684
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)