Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C22
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16895.1 68416.m02160 expressed protein                             31   0.30 
At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4)...    29   2.1  
At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger) fa...    27   4.8  
At1g30640.1 68414.m03747 protein kinase, putative contains prote...    27   4.8  
At3g27325.1 68416.m03415 expressed protein                             27   8.5  

>At3g16895.1 68416.m02160 expressed protein
          Length = 83

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
 Frame = +1

Query: 58  SSLLLFVCITFLVI-VSSPQNGALAD--KLIG----SC-VWGAVNYTSD-CNAECKRRGY 210
           S+  L  C   +++ VS P N  LA   ++ G    +C +  + +Y +D CN +C R G+
Sbjct: 3   STKTLVTCFLVIILAVSLPNNNVLASDARIEGFSFDNCNIRCSEDYWNDECNKDCLRAGF 62

Query: 211 -RGGHCGS---FANVNCWCE 258
            +GG CGS      V C C+
Sbjct: 63  QKGGQCGSPCIPCPVKCCCQ 82


>At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4) /
           gibberellin-responsive protein 4 identical to SP|P46690
           Gibberellin-regulated protein 4 precursor {Arabidopsis
           thaliana}
          Length = 106

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
 Frame = +1

Query: 43  MVKNYSSLLLFVCITF-----LVIVSSPQNGALADKLIGSCVWGAVNYTSDCNAECKRRG 207
           M K+Y ++ L   I       +V+ SS  N   + K  G          S+C+  CK+  
Sbjct: 1   MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQ 60

Query: 208 YRGGHCGSFANVNC 249
           Y    C +F N  C
Sbjct: 61  YHKA-CITFCNKCC 73


>At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 254

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 172 TSDCNAECKRRGYRGGHCGSF 234
           T+D N + KRR Y+ G C SF
Sbjct: 209 TTDANVKSKRRHYQTGSCVSF 229


>At1g30640.1 68414.m03747 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 562

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -1

Query: 470 YIED--KIKQ*FAVSKQYEQLVIKSRISDSDILIENAMDIFK 351
           YIE+  KI++     ++  + +++  ++D+D+ +E+ MDI K
Sbjct: 57  YIENHYKIQKKSLQERKERRSILEQNLADADVTVEDKMDILK 98


>At3g27325.1 68416.m03415 expressed protein
          Length = 1048

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -1

Query: 212 LYPRLLHSALQSEV*LTAPHTQLPISL 132
           ++PRL  SA+Q+ + L++PH   P++L
Sbjct: 234 VHPRLRKSAVQTILTLSSPHQSPPLAL 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,581,507
Number of Sequences: 28952
Number of extensions: 184673
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)