Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C21
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    28   0.16 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   0.36 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   0.63 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   1.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    24   2.6  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    24   2.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.4  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    23   4.5  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    23   5.9  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    23   5.9  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    23   7.8  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    23   7.8  

>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 216 ICKWKDSTRSCVIRELQSFGQYAKFHRY 133
           +C+  DSTRSCVI +  S   Y+    Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 87  GYAIPPIYEVLPEYFNNGEILHTAQRI 167
           GY +PP+Y++   +  + E+L  +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 216 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 64
           IC W   T+S    E +     AK+HR+ +I   V+ H   E   L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 155 CPKDWSSRITHDRVLSFHL 211
           CPK WS  I H R  SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 207 WKDSTRSCVIRELQSFGQYAKFHRY*NIPVKPHILEE 97
           W  +T SC++ +      YA FH   +IP   H L +
Sbjct: 738 WMIATTSCMLAQFALHSPYAFFH---DIPSISHFLNK 771


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
 Frame = +3

Query: 120 PEYFNNGEILHTAQRIGVHGS------RMIEY----YPSTYKWDNSV 230
           PE F+ G+IL      GVH +      +++EY    Y S   WD +V
Sbjct: 604 PESFSKGDILLGLASDGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNV 650


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 198 STRSCVIRELQSFGQYAKFH 139
           +T S + R++ S+G Y  FH
Sbjct: 284 TTSSSLFRQIASYGVYGSFH 303


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 172 TPILWAVCKISPLLKYSGKTSYIGGIA 92
           T  LW   + +PLL+  G  + +G +A
Sbjct: 246 TVCLWKASQSTPLLRLEGHLARVGRVA 272


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 102 PIYEVLPEYFN--NGEILHTAQRIGVHGSRMIEYYPSTYKW 218
           P ++ L +  N  NG+  H A+   +   +++E YP+  KW
Sbjct: 399 PYFKALEDIANQYNGKP-HWAKEYSLTKEQLLERYPNLSKW 438


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 75  SDLEGYAIPPIYEVLPEYFN 134
           SD  G ++PP ++ L ++FN
Sbjct: 56  SDYHGISMPPKFKRLGDFFN 75


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 192 EYYPSTYKWDNSVVIRSN 245
           + YP+ + W  + +IRSN
Sbjct: 205 QQYPAAFLWSLATLIRSN 222


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 87  GYAIPPIYEVLPEYFNNGEILHT 155
           G  +  ++ V  E F  GE+ HT
Sbjct: 292 GLGVKEVWRVPDENFRKGEVAHT 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,763
Number of Sequences: 5004
Number of extensions: 21406
Number of successful extensions: 43
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)