Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C21
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    28   1.2  
05_06_0172 + 26138238-26138474,26138712-26139854                       26   3.7  
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440...    26   4.8  
10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228           25   6.4  
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801...    25   6.4  
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     25   6.4  
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    25   8.5  

>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 57  TLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 161
           T+ +  SD E  A P     LP+  NN  +L++ Q
Sbjct: 382 TMRVFESDFEAKAAPEFGNTLPKSSNNNSMLNSEQ 416


>05_06_0172 + 26138238-26138474,26138712-26139854
          Length = 459

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 111 EVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNT 248
           ++LP+YF +       +++  +G R I+  P  +++ N   IR +T
Sbjct: 58  DLLPKYFKHNNFSSFIRQLNTYGFRKID--PERWEFANEDFIRGHT 101


>02_03_0034 -
           14142518-14142923,14142935-14143269,14143976-14144068,
           14144704-14145674,14145714-14145812,14146011-14146488,
           14146717-14146929
          Length = 864

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 39  YIYVLSTLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 161
           ++ V+  +HI+ S L+   +P     L +  NN  +L T +
Sbjct: 316 FVEVIQKIHINVSLLDAIQVPTYARYLKDILNNKRLLPTME 356


>10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228
          Length = 434

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 9   YMKDRVNQDL--YIYVLSTLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 161
           Y K  V++    ++ V+  +HIH   L+   +P     L +  NN   L T +
Sbjct: 259 YRKPSVDEQFARFVEVIQNIHIHVPLLDAMQVPTYALYLKDILNNKRPLPTTE 311


>03_02_0387 -
           8016399-8016575,8016661-8016788,8017073-8017214,
           8017301-8017396,8017572-8017712,8017857-8018031,
           8018443-8018575,8018661-8018733,8018807-8018900,
           8019890-8019981,8020091-8020185,8020267-8020378
          Length = 485

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +3

Query: 75  SDLEGYAIPPIYEVLPEYFNNGEIL------HTAQRIGVHGSRMIEYY 200
           S L  Y I  I+ V+P +   G+I+      H A + G+H SR    Y
Sbjct: 174 SILYSYGISTIFSVIPAFCKKGDIIVADEGVHWAVQNGLHLSRSTVVY 221


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 93  AIPPIYEVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNT 248
           A+  +Y VL     NGE++  ++R G   S +  Y P    +D +  +R+ T
Sbjct: 750 AVGNVYGVLNS--RNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAET 799


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 57  TLHIHRSDLEGY 92
           TLHI+RSDL+G+
Sbjct: 730 TLHIYRSDLQGH 741


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,817,196
Number of Sequences: 37544
Number of extensions: 121082
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)