Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C21
(248 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087) 27 1.8
SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6) 26 5.4
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_15818| Best HMM Match : Apo-VLDL-II (HMM E-Value=1.2) 25 9.4
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 25 9.4
SB_20500| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_19125| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3) 25 9.4
SB_10234| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
>SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 90 YAIPPIYEVLPEYFNNGEILHTAQR 164
YA+P Y LP+Y NN E++ +R
Sbjct: 9 YAVPVFYNALPQYLNN-ELVRIEKR 32
>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 87 GYAIPPIYEVLPEYFNNGEILHT-AQRIGVHGSRMIEYYPS--TYKWDNS 227
G A PP+ + L E NG+ + T + +I +G R +E + + Y+W +S
Sbjct: 1274 GKARPPLIQALEEPLANGQDVRTISAKITNYGFRRVEDFDNMRRYEWRSS 1323
>SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)
Length = 360
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 87 GYAIPPIYEVLPEYFNNGEILHTAQR 164
GYA+P + LP+Y N E++ +R
Sbjct: 194 GYAVPVFHNALPQYLKN-ELVRIEKR 218
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 201 DSTRSCVIRELQSFGQYAKFHRY*NIP--VKPHILEE*RNLLSQNDECVE 58
D T+ + LQ F + A +++ +P K H LEE RN+L+ C +
Sbjct: 106 DQTQMSISTTLQQFVKNA-LNKHAQLPKTCKQHELEEDRNILTAMQSCFD 154
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 90 YAIPPIYEVLPEYFNNGEILHTA 158
YA+P + LP+Y N +L+ A
Sbjct: 661 YAVPVFHNALPQYLKNELLLYKA 683
>SB_15818| Best HMM Match : Apo-VLDL-II (HMM E-Value=1.2)
Length = 218
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 216 ICKWKDSTRSCVIRELQSFGQYAKFHR 136
+ W + TR + E +F + ++FHR
Sbjct: 145 LTSWTEGTRHTTLSETFAFARLSRFHR 171
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 48 VLSTLHIHRSDLEGYAIPPIYEVLPEYFNNGEILH 152
+ LHI R D PP+Y + + G +LH
Sbjct: 290 IADILHIWRQDKNAPPGPPLYPFVGNFPQIGPVLH 324
>SB_20500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 216 ICKWKDSTRSCVIRELQSFGQYAKFHR 136
+ W + TR + E +F + ++FHR
Sbjct: 75 LTSWTEGTRHTTLSETFAFARLSRFHR 101
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 54 STLHIHRSDLEGYAIPPIYEVLPEYFNNGEI 146
S +HIH +D P + ++LP NN I
Sbjct: 2274 SEVHIHSADDSAALTPVVCDMLPYVLNNPTI 2304
>SB_19125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 84 EGYAIPPIYEVLPEYFNNGEILHTAQRIGVHGSRM 188
E Y PP++ ++P G + Q IG+H S +
Sbjct: 14 EKYCAPPLFVLVPLMQLTGIHASSLQLIGIHASSL 48
>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
Length = 210
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = +2
Query: 155 CPKDWSSRIT-HDRVLS 202
CP+ W SRI+ H+ VLS
Sbjct: 54 CPRTWGSRISRHNHVLS 70
>SB_10234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 216 ICKWKDSTRSCVIRELQSFGQYAKFHR 136
+ W + TR + E +F + ++FHR
Sbjct: 41 LTSWTEGTRHTTLSETFAFARLSRFHR 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,169
Number of Sequences: 59808
Number of extensions: 156386
Number of successful extensions: 262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -