Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C21
(248 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excisi... 27 8.3
BC006575-1|AAH06575.2| 803|Homo sapiens MMS19L protein protein. 27 8.3
BC002692-1|AAH02692.1| 692|Homo sapiens Unknown (protein for IM... 27 8.3
AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homol... 27 8.3
AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homol... 27 8.3
AL355490-23|CAI40792.1| 885|Homo sapiens MMS19-like (MET18 homo... 27 8.3
AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homol... 27 8.3
AK056581-1|BAB71223.1| 375|Homo sapiens protein ( Homo sapiens ... 27 8.3
AK027710-1|BAB55315.1| 774|Homo sapiens protein ( Homo sapiens ... 27 8.3
AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein. 27 8.3
AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional coactiv... 27 8.3
AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein. 27 8.3
AF007151-1|AAC19154.1| 341|Homo sapiens unknown protein. 27 8.3
>BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excision
repair homolog (S. cerevisiae) protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>BC006575-1|AAH06575.2| 803|Homo sapiens MMS19L protein protein.
Length = 803
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 261 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 320
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 321 QCSRHLC 327
>BC002692-1|AAH02692.1| 692|Homo sapiens Unknown (protein for
IMAGE:3605877) protein.
Length = 692
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 150 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 209
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 210 QCSRHLC 216
>AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>AL355490-23|CAI40792.1| 885|Homo sapiens MMS19-like (MET18
homolog, S. cerevisiae) protein.
Length = 885
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 343 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 402
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 403 QCSRHLC 409
>AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>AK056581-1|BAB71223.1| 375|Homo sapiens protein ( Homo sapiens
cDNA FLJ32019 fis, clone NTONG1000098. ).
Length = 375
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 124 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 183
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 184 QCSRHLC 190
>AK027710-1|BAB55315.1| 774|Homo sapiens protein ( Homo sapiens
cDNA FLJ14804 fis, clone NT2RP4001638, weakly similar to
DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19. ).
Length = 774
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 232 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 291
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 292 QCSRHLC 298
>AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional
coactivator MMS19 protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein.
Length = 1030
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 488 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 547
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 548 QCSRHLC 554
>AF007151-1|AAC19154.1| 341|Homo sapiens unknown protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQYAKFHRY-*NIPVKPHILEE*R---NLLSQNDECV 61
H Y + K+ ++SC + L++ G A + + + P + EE R + L+ DE
Sbjct: 50 HLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPT 109
Query: 60 EC*GHIC 40
+C H+C
Sbjct: 110 QCSRHLC 116
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,765,719
Number of Sequences: 237096
Number of extensions: 749627
Number of successful extensions: 1194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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