Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C21
         (248 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    25   5.4  
Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z81527-10|CAB04276.2|  218|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF068713-4|AAC17795.2|  398|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF016420-1|AAB65307.2|  310|Caenorhabditis elegans Serpentine re...    25   9.4  

>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 57  TLHIHRSDLEGYAIPPIYEV 116
           T++IH + + GY +PP  ++
Sbjct: 291 TVNIHHTGVHGYPVPPFLQI 310


>Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical
           protein F35E12.9b protein.
          Length = 390

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 108 YEVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDN 224
           Y +  +  N   +L  A R+GV+  +++ YY   Y  DN
Sbjct: 106 YTITSDNPNEKVVLSYAMRVGVNEDKLLAYY-YVYDGDN 143


>Z81527-10|CAB04276.2|  218|Caenorhabditis elegans Hypothetical
           protein F35E12.9a protein.
          Length = 218

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 108 YEVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDN 224
           Y +  +  N   +L  A R+GV+  +++ YY   Y  DN
Sbjct: 46  YTITSDNPNEKVVLSYAMRVGVNEDKLLAYY-YVYDGDN 83


>Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical
           protein W07A12.7 protein.
          Length = 502

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 39  YIYVLSTLH-IHRSDLEGYAIPPIYEVLPEYFN 134
           YI V +T   + RS L   AI  IY +LPEY+N
Sbjct: 352 YIMVSTTSKTLFRSSLI-VAIATIYAILPEYWN 383


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 96  IPPIYEVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNT 248
           I PI  +   +  NG   H A  I  +GS M+    + + W N+ ++  NT
Sbjct: 163 IYPILCIAIMFPGNGFCSHVAYPI--YGSIMLRVTDTMFGWTNNYILMFNT 211


>AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical
           protein Y47H9C.7 protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 90  YAIPPIYEVLPEYFNNGEILHT 155
           Y + P Y++ P +  N + LHT
Sbjct: 255 YVLAPFYKLCPFFMTNPDSLHT 276


>AF068713-4|AAC17795.2|  398|Caenorhabditis elegans Hypothetical
           protein T24A6.8 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   VYMKDRVNQDLYIYVLSTLHIHRSDLEGYAIPPIYEVLPEY 128
           ++ + ++  DLYIYVLS L +     + +++P I E++  Y
Sbjct: 357 LHRQQKLMNDLYIYVLSPLLLKLP--KEFSVPLIEEIVLLY 395


>AF016420-1|AAB65307.2|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein11 protein.
          Length = 310

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 43  YMSSALYTFIVLT*KVTLFLQYMRFYRNIS 132
           + S+     +V+   + +F+++  FYRNIS
Sbjct: 88  FQSAQSVIMVVIVLDILIFVKFPTFYRNIS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,110,549
Number of Sequences: 27780
Number of extensions: 115599
Number of successful extensions: 267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)