Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C21
(248 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00... 27 1.7
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ... 27 1.7
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 26 4.0
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase... 26 4.0
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase... 26 4.0
At2g02710.2 68415.m00212 PAC motif-containing protein similar to... 26 4.0
At2g02710.1 68415.m00211 PAC motif-containing protein similar to... 26 4.0
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 25 5.3
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 25 5.3
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 25 7.0
At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase f... 25 7.0
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi... 25 7.0
At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ... 25 9.2
>At4g33290.1 68417.m04736 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 430
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 245 IRPNNNTIIPFVSGRIVLD 189
I PNNN ++PF+ G +D
Sbjct: 304 IEPNNNIMVPFIYGGFFID 322
>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
identical to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
dehydrogenase [Amaranthus hypochondriacus] GI:2388710
Length = 501
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 126 YFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVI 236
++ NG+I R+ VH S E+ KW ++ I
Sbjct: 287 FWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKI 323
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 117 LPEYFNNGEILHTAQRIGVHGS 182
LP Y++ TA IGVHGS
Sbjct: 63 LPSYYSPATTTTTASLIGVHGS 84
>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 629
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 54 STLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQRIGVHG 179
S HR + G ++PP + +P G IL +R+ + G
Sbjct: 498 SCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLG 539
>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 628
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 54 STLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQRIGVHG 179
S HR + G ++PP + +P G IL +R+ + G
Sbjct: 497 SCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLG 538
>At2g02710.2 68415.m00212 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 397
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 160 WAVCKISPLLKYSGKTSYIGGI 95
W + ISP+ SGKT+Y G+
Sbjct: 337 WNLLHISPVRNASGKTAYFVGV 358
>At2g02710.1 68415.m00211 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 399
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 160 WAVCKISPLLKYSGKTSYIGGI 95
W + ISP+ SGKT+Y G+
Sbjct: 339 WNLLHISPVRNASGKTAYFVGV 360
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 139 PLLKYSGKTSYIGGIA*PSKSE 74
PL K S TS GG+ P+KSE
Sbjct: 260 PLHKTSSNTSSYGGLVSPTKSE 281
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 139 PLLKYSGKTSYIGGIA*PSKSE 74
PL K S TS GG+ P+KSE
Sbjct: 260 PLHKTSSNTSSYGGLVSPTKSE 281
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 43 YMSSALYTFIVLT*KVTLFLQYMRFYRNISITVKFCIL 156
Y+ S Y FIVLT L +++ +S VKF ++
Sbjct: 634 YIRSCDYYFIVLTAFCVLICEHLEHITLLSCLVKFSLI 671
>At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein / steroid 5-alpha-reductase family
protein similar to synaptic glycoprotein SC2 spliced
variant from Homo sapiens [EMBL:AF038958], SC2 from
Rattus sp. [gi:256994]; contains Pfam
3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
Length = 310
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 228 HYYPICKWKDSTRSCVIRELQSFGQY 151
+Y+P+ K+ CVI +Q++ Y
Sbjct: 111 YYFPVYKFLGYGEDCVIHPVQTYAMY 136
>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 633
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 186 MIEYYPSTYKWDNSVVIR 239
+I+ Y T++W+NSV +R
Sbjct: 545 LIKIYEMTWRWENSVKLR 562
>At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO
Domain IPR002109, Glutaredoxin (thioltransferase)
Length = 630
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 123 EYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVV 233
E+F NG I + +H SR+I++Y + + ++
Sbjct: 555 EFFQNGGIEVVLDKRTIHLSRIIKWYKEDFSEEKKML 591
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,726,794
Number of Sequences: 28952
Number of extensions: 106682
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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