Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C19
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 66 3e-12
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.60
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 28 0.60
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 2.4
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.2
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 4.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 5.6
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 7.3
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 7.3
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 7.3
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 24 9.7
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 9.7
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 9.7
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 65.7 bits (153), Expect = 3e-12
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Frame = +1
Query: 148 QIGGEKNGGTRTVLL--KSRKSFYPT-QDKIRGRSHGTSFSKHVRRT--RPNLTPGTVCI 312
++ G KNGG R VL ++ +YP ++ + ++ K VR T R +L PGTVCI
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKAR-----KAVRPTKLRASLAPGTVCI 59
Query: 313 LLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 453
LLAGR GKR TGP+ N P+RR+ RYVI TS
Sbjct: 60 LLAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATS 105
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.60
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 26 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 136
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 28.3 bits (60), Expect = 0.60
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +1
Query: 178 RTVLLKSRKSFYPTQDKIRGR----SHGTSFSKHVRRTRPNLTP 297
RT+L + K FYP GR H SK R+ R TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 347 CSLECCRVVCYSSLDLL 397
CSLE +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 2.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 5 ANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 151
++RG T E V + G T+ Y SLS+ ++K +N P SK
Sbjct: 196 SDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 205 SFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 342
+FY R SH +S S ++P LT + +L + H +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 399 SKRSSEE*QTTRQHSNEHDTLASVSARQQNAHCAGSEVRSRPTHMFTETRA 247
+K++ E T + SN+ + S+S ++QN+ A + RS TETR+
Sbjct: 275 TKQTYYENYRTEKLSNDSPSNTSLSLQKQNSIVANEDKRSVNGSERTETRS 325
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 401 KAKGPVKSSRPLGNTPTSTTR 339
KAK P+KSS+ N P S R
Sbjct: 3 KAKSPIKSSKKSVNQPKSVLR 23
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 357 SVAEWSATLHWTFCFQRVSPAQDSAAL 437
S+ ++SA H CF SP Q++ A+
Sbjct: 266 SLIKYSAAAHTRICFAVNSPCQEALAI 292
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 127 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 41
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 371 PLGNTPTSTTRLPACLPANR 312
P N T TRLP +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 154 GGEKNGGTRTVLLKSRKSFYPTQDKIRGRSH 246
GGEKNG L S S+ T + RSH
Sbjct: 308 GGEKNGEAPLEALLSLLSYINTHQRQSERSH 338
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 225 VLSGVE*FPAFQQDCTSASILFTAYL 148
VLSG++ Q++CT ++L T+YL
Sbjct: 429 VLSGLQ--QLMQEECTDIAVLRTSYL 452
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 209 NDFLLFSRTVRVPPFFSPPICLT 141
ND L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,092
Number of Sequences: 5004
Number of extensions: 39681
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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