Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C19
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 72 3e-13
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 66 1e-11
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.0
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 29 1.8
01_07_0229 + 42161770-42164562 28 3.1
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 5.5
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 5.5
10_08_0974 + 21969713-21971914 27 9.6
10_05_0023 + 8171023-8171782,8172658-8172950 27 9.6
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874 27 9.6
06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750 27 9.6
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 27 9.6
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 71.7 bits (168), Expect = 3e-13
Identities = 43/103 (41%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +1
Query: 163 KNGGTRTVLLK----SRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILLAGRH 330
KNGGT K + FYP D ++ R+ T + + R +TPGTV ILLAGR+
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADD-VKPRAPSTR-KANPTKLRSTITPGTVLILLAGRY 88
Query: 331 AGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 459
GKR TGPF N P+RR+ Q YVI TSTK
Sbjct: 89 MGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTK 131
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 66.1 bits (154), Expect = 1e-11
Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +1
Query: 25 LGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRK 204
L G+ + S+S YH++ ++ + K V +
Sbjct: 7 LSQGIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPS 65
Query: 205 SFYPTQDKIRGRSHGT----SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 372
+ P K+R S S + + R ++TPGTV ILLAGR GKR
Sbjct: 66 TRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
Query: 373 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 459
TGPF N P+RR+ Q YVI TSTK
Sbjct: 126 LLLVTGPFKINGVPIRRVNQPYVIATSTK 154
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 434 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 342
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 389 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 258
P ++ P+ +TP+ T + CLPA+R T R +LR L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 29 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 121
+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 196 SRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCI 312
SRK PTQ + G HGTS + + RR + P V +
Sbjct: 261 SRKIQMPTQMALPGSPHGTS-AGYARRAPQKVAPSRVSV 298
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 389 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 282
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>10_08_0974 + 21969713-21971914
Length = 733
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 180 YSPAEKQEIILPHSGQDQGSFSWHEFQ*TCA*DET 284
Y P+ K +++ G +QG+ SW EF T D+T
Sbjct: 364 YRPS-KSDVVGGEDGVEQGNTSWPEFVPTSGPDKT 397
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 346 RHACQRVCPPTECTLCRE*G*VSSYAHVY*NSCHE-NDP*SCPEWGRMISCF 194
RH + CT C E G V+S C E + P CP R ++CF
Sbjct: 201 RHLGEEEMESKACTRCGEIGHVASMCLTLCTHCEEDHPPGECPT--RKVTCF 250
>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
Length = 488
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2
Query: 434 RCGILRRGHALKAKGPVKSSRPLGNTPTSTTRLP--ACLPANRMHTV 300
RCG ++GH A PL +P ++ + LP + +HT+
Sbjct: 19 RCGFPKKGHVCAAAAAAPGDLPLLPSPEEEEKVDGISALPDDVVHTI 65
>06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750
Length = 433
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -1
Query: 456 SRCSNDIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAHCAGSEVRSR 277
SRC + I++R +G R + ++ ++ N+H LAS +A + + ++ S
Sbjct: 13 SRCGSSISMR--MEGDRNGALAMLSISSSSARYGNDHQELASAAAAFRESAGDPRKLSSG 70
Query: 276 PTHMFTETRAMRTT 235
+ R+MR+T
Sbjct: 71 MSSRLLPARSMRST 84
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 346 RHACQRVCPPTECTLCRE*G*VSSYAHVY*NSCHE-NDP*SCPEWGRMISCF 194
RH + CT C E G V+S C E + P CP R ++CF
Sbjct: 582 RHLGEEEMESKACTRCGEIGHVASMCLTLCTHCEEDHPPGECPT--RKVTCF 631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,677
Number of Sequences: 37544
Number of extensions: 289049
Number of successful extensions: 793
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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