Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C19
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 37 0.007
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 32 0.26
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 29 1.8
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 28 3.2
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 4.3
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_44729| Best HMM Match : SET (HMM E-Value=0) 27 7.5
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12) 27 7.5
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 7.5
SB_15365| Best HMM Match : U79_P34 (HMM E-Value=1.8) 27 7.5
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 27 9.9
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 27 9.9
SB_10199| Best HMM Match : DUF1625 (HMM E-Value=2.1e-08) 27 9.9
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 391 PFAFNACPLRRIPQRYVIGTST 456
PF N PLRRIPQ YVI TST
Sbjct: 2 PFKINGVPLRRIPQSYVIATST 23
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 332 LASVSCSLECC--RVVCYSSLDLLLSTRVPCAGFR 430
+A SC + CC RVVCYS + S RV C R
Sbjct: 162 VACCSCRVACCSCRVVCYSCRVVCYSCRVACCSCR 196
Score = 31.5 bits (68), Expect = 0.35
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 344 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 430
SC + CC RVVCYS + S RV C R
Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCR 154
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 344 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 430
SC + CC RVVCYS + S RV C R
Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCR 217
Score = 30.7 bits (66), Expect = 0.61
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 305 CAFCWRADTLASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFRSA 436
C + + +A SC + C CRVVCYS S RV C R A
Sbjct: 202 CRVVFCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVA 247
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 344 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 430
SC + CC RVVCYS S RV C R
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCR 175
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 332 LASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFR 430
+A SC + C CRVVCYS S RV C R
Sbjct: 169 VACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCR 203
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 344 SCSLECC--RVVCYSSLDLLLSTRVPCAGFRSA 436
SC + CC RVVCYS S RV C R A
Sbjct: 229 SCRVACCSCRVVCYSCRVACCSCRVVCYSCRVA 261
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 332 LASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFRSAM 439
+A SC + C CRV C S + S RV C R M
Sbjct: 232 VACCSCRVVCYSCRVACCSCRVVCYSCRVACCSCRVHM 269
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 189 QDCTSASILFTAYLLNHDGWFLGLFSFRVLLTDKLI 82
+D T S+LFT YL D FL R+ L DK++
Sbjct: 1065 EDTTPTSLLFTVYLDYDDDKFLNDVKVRLGLVDKIV 1100
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 401 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVP 297
K+ P KS++P + PT+ T LP P R+ ++P
Sbjct: 202 KSTKPTKSTKPTESKPTAPTSLPDQRPNCRLPSMP 236
>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 290 SLPAQCAFCWRADTLASVSCSLECCRVVC 376
S+ QC W A S+S +++ C+ VC
Sbjct: 127 SVEKQCVVRWLASVRTSISTAVDVCKAVC 155
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 321 GQTRWQ-ACRARWSVAEWSATLHWTFCFQRVSPAQDSAALC 440
G+ RW+ A + W + W + + C QRV D ALC
Sbjct: 178 GEMRWKLALKRNWLYSNWKCVVCYRNCSQRVDSHFD-VALC 217
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 401 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVPG 294
+ K PV +SR L N PT T + + H +PG
Sbjct: 1009 RIKTPVPTSRLLLNVPTQNTAKSIIIQTYKKHALPG 1044
>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 1 VGKPRNYDLGNGVLRF 48
VG PRN LGNG+ RF
Sbjct: 508 VGDPRNCPLGNGIFRF 523
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/67 (37%), Positives = 32/67 (47%)
Frame = -2
Query: 335 PACLPANRMHTVPGVRLGLVLRTCLLKLVP*ERPLILS*VG*NDFLLFSRTVRVPPFFSP 156
P+CLP+ + H P L + T L+ LVP S + F L+ RT RVPP
Sbjct: 1388 PSCLPSTQEHASP-----LFVFTLLVYLVPQNTRTPCSCLP-FLFTLYPRT-RVPPVRVY 1440
Query: 155 PICLTTT 135
P CL T
Sbjct: 1441 PSCLPCT 1447
>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 172 GTRTVLLKSRKSFYPTQDKIRGRSHGTS 255
G + +L+ S K F+PTQ I GTS
Sbjct: 209 GCKAILVASEKPFHPTQGGIAEEKDGTS 236
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 236 VVLMARVSVNMCVGRDLTSL-PAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRV 412
V+ +RV + +C R L P++ + SVSC C V+C S + ++L
Sbjct: 83 VLCPSRVCIVLCPSRVCIVLCPSRVCIVLCPSRVVSVSCPYRVCIVLCPSCVCIVLCPSC 142
Query: 413 PC 418
C
Sbjct: 143 VC 144
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 247 HENDP*SCPEWGRMISCFSAGLYECLH 167
HE+D C + G++I C +G +C H
Sbjct: 974 HEDDCFICGDGGQLIMCDRSGCLKCYH 1000
>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
Length = 917
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -2
Query: 428 GILRRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGL 279
G + K K P + + PLG P LPAN +P LG+
Sbjct: 480 GFPKLAEKFKGKPPRRVAIPLGVKPKEPKGYKPLLPANGEEEIPPYELGV 529
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -3
Query: 394 KVQ*RVADHSATLQRARHACQRVCPPTECTLCRE*G*VSSYAHVY*NSCHENDP*SCP 221
K+ R+ +H H Q +C P E + RE AH Y S +++ P P
Sbjct: 2028 KLSNRLEEHVMMETTLHHNNQSMCVPVESGMFREKHHTPPSAHSYGTSSYDSSPQKLP 2085
>SB_15365| Best HMM Match : U79_P34 (HMM E-Value=1.8)
Length = 992
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 320 RADTLASVSCSLECCRVVCY 379
+ D LA V + ECC+VVC+
Sbjct: 780 KLDRLAEVIITDECCKVVCF 799
>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 154 GGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILL 318
G N T + ++ +S + + R S+ +H RTRP T VCI L
Sbjct: 503 GESSNSNTESATVEKPRSSV-REKRQRIASYMIKRQRHTPRTRPKFTASGVCITL 556
>SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 429 RNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAHCAGSEVR 283
R P Q KR + T + + TLA+ RQ N A SE R
Sbjct: 41 RQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKR 89
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 429 RNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAHCAGSEVR 283
R P Q KR + T + + TLA+ RQ N A SE R
Sbjct: 53 RQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKR 101
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 429 RNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAHCAGSEVR 283
R P Q KR + T + + TLA+ RQ N A SE R
Sbjct: 65 RQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKRQPNQTLATSEKR 113
>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 163 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTP 297
K+GG++ ++ F ++ R + H T S+HV++ + N P
Sbjct: 251 KSGGSKVTSMRKCDGFQWNENTGREQEHRTCASEHVQQPQGNPPP 295
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Frame = +2
Query: 266 MCVGRDLTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDL------LLSTRVPCAGF 427
+C+ L C+ +LA C L C V CY L L LL VPC
Sbjct: 1090 LCLAMTCYDLLCLAVPCYALLSLAMPCCPLLCLAVPCYVVLSLAMPCCPLLCLAVPCYAL 1149
Query: 428 RS-AMS 442
S AMS
Sbjct: 1150 LSLAMS 1155
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +2
Query: 314 CWRADTLASVSCSLECCRVVCYSSLDL------LLSTRVPCAGFRS-AMS 442
C+ +LA C L C V CY+ L L LL VPC S AMS
Sbjct: 1186 CYVVLSLAMSCCPLLCLAVPCYALLSLAMSCCPLLCRAVPCYALLSLAMS 1235
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = -1
Query: 459 LSRCSNDIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQN---AHCAGSE 289
+ R + +A N ++G S RSS + + ++HD + +S Q+ A AG
Sbjct: 10 MGRYAGSVADSNVSRGEFAMSDRSSMDFVPLKIVRDDHDDSSVISGLHQSPMPASMAGDT 69
Query: 288 VRSRPTHM-FTETRAMRTTPD 229
++ ETR TTPD
Sbjct: 70 LQHTLLEQDLEETRMTATTPD 90
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 294 SEVRSRPTHMFTETRAMRTTPDLVLSGVE*FPAFQQD 184
S +SR + TET +R + SGV+ FP Q+D
Sbjct: 2341 SSAKSRYERVETETTIVRDAGGQLESGVDMFPDMQED 2377
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = -1
Query: 459 LSRCSNDIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQN---AHCAGSE 289
+ R + +A N ++G S RSS + + ++HD + +S Q+ A AG
Sbjct: 277 MGRYAGSVADSNVSRGEFAMSDRSSMDFVPLKIVRDDHDDSSVISGLHQSPMPASMAGDT 336
Query: 288 VRSRPTHM-FTETRAMRTTPD 229
++ ETR TTPD
Sbjct: 337 LQHTLLEQDLEETRMTATTPD 357
>SB_10199| Best HMM Match : DUF1625 (HMM E-Value=2.1e-08)
Length = 401
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 372 TTRQHSNEHDTLASVSARQQNAHCAGSEVRSRPTHMFTETRAMRTTPD 229
T ++H+ H ASV +QN +C + R++ + R+M T+P+
Sbjct: 344 TAKKHTYRHSRFASVKLHRQN-NCRATSTRTK--CFKPQLRSMLTSPN 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,407
Number of Sequences: 59808
Number of extensions: 337417
Number of successful extensions: 983
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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