Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C19
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 57 7e-09
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 30 0.93
Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical pr... 27 6.6
AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical... 27 6.6
AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical ... 27 6.6
AC084153-1|AAK84596.1| 385|Caenorhabditis elegans Hypothetical ... 27 6.6
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 56.8 bits (131), Expect = 7e-09
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 244 HGTSFSKHVRRT---RPNLTPGTVCILLAGRHAGKRXXXXXXX-XXXXXXFTGPFAFNAC 411
+GT F+ +T R LTPGTV I+LAGRH GKR TGP N
Sbjct: 53 NGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGF 112
Query: 412 PLRRIPQRYVIGTSTK 459
PLRRI Q +VI TS K
Sbjct: 113 PLRRIGQAFVIATSLK 128
Score = 30.7 bits (66), Expect = 0.53
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 13 RNYDLGNGVLRFSKSRMYHKK 75
RN+DL GVLRFS SR+ KK
Sbjct: 12 RNFDLSPGVLRFSASRLRLKK 32
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 29.9 bits (64), Expect = 0.93
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 208 FYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 342
FYPT+ + RSHG + PN V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical
protein F17C11.1 protein.
Length = 172
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 272 VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 364
V R+ T+L ++C F W A T A+ +CS CC
Sbjct: 74 VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107
>Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = -1
Query: 423 PAQGTRVESKRSSEE*QTTRQHSNEHDT----LASVSARQQNAHCAGSEVRSRPTHMFTE 256
PA+ + S S + + + ++NEH+T L +S ++ + V + +
Sbjct: 125 PAEPNKARSS-SYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVDTVVTTIDGQRYD 183
Query: 255 TRAMRTTPDLVLSGVE*FPAFQ 190
TR + T PDL + V FP FQ
Sbjct: 184 TRELDTDPDLAETAVWSFPIFQ 205
>Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = -1
Query: 423 PAQGTRVESKRSSEE*QTTRQHSNEHDT----LASVSARQQNAHCAGSEVRSRPTHMFTE 256
PA+ + S S + + + ++NEH+T L +S ++ + V + +
Sbjct: 125 PAEPNKARSS-SYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVDTVVTTIDGQRYD 183
Query: 255 TRAMRTTPDLVLSGVE*FPAFQ 190
TR + T PDL + V FP FQ
Sbjct: 184 TRELDTDPDLAETAVWSFPIFQ 205
>Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical
protein AC3.8 protein.
Length = 531
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 129 FLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 1
FL +F F L + L Y+ LVV P FG + + AN
Sbjct: 4 FLLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46
>AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = -1
Query: 423 PAQGTRVESKRSSEE*QTTRQHSNEHDT----LASVSARQQNAHCAGSEVRSRPTHMFTE 256
PA+ + S S + + + ++NEH+T L +S ++ + V + +
Sbjct: 125 PAEPNKARSS-SYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVDTVVTTIDGQRYD 183
Query: 255 TRAMRTTPDLVLSGVE*FPAFQ 190
TR + T PDL + V FP FQ
Sbjct: 184 TRELDTDPDLAETAVWSFPIFQ 205
>AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical
protein F37C4.3 protein.
Length = 685
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 208 FYPTQDKIRGRSHGTSFSKHVRRTRPN 288
FYP+ +S+ T F +H+R+ +P+
Sbjct: 502 FYPSTQSATCKSNFTDFEEHIRQEKPD 528
>AC084153-1|AAK84596.1| 385|Caenorhabditis elegans Hypothetical
protein Y22D7AL.7 protein.
Length = 385
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 166 NGGTRTVLLKSRKSFYPTQDKIRGRSHGTSFSKH-VRRTRPNLTPGTVCILLAGRHAG 336
NG ++ R D I GR +S S VRR P PG + + H G
Sbjct: 243 NGHVSSMTRHQRHLATSINDVINGRQVTSSMSSELVRRAMPRHPPGGIATSIVSEHRG 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,946
Number of Sequences: 27780
Number of extensions: 236142
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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