Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C19
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 74 4e-14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 74 4e-14
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 71 4e-13
At5g60060.1 68418.m07531 F-box family protein various predicted ... 31 0.28
At5g44290.1 68418.m05421 protein kinase family protein contains ... 29 2.0
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 28 3.5
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 27 4.6
At5g62910.1 68418.m07894 expressed protein predicted proteins, A... 27 6.1
At3g55160.1 68416.m06126 expressed protein 27 6.1
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 27 8.1
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 27 8.1
At1g71015.1 68414.m08194 expressed protein 27 8.1
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 74.1 bits (174), Expect = 4e-14
Identities = 50/149 (33%), Positives = 69/149 (46%)
Frame = +1
Query: 13 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 192
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 193 KSRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 372
+ FYP +D ++ +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 373 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 459
TGPF N PLRR+ Q YVIGTSTK
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTK 145
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 74.1 bits (174), Expect = 4e-14
Identities = 50/149 (33%), Positives = 69/149 (46%)
Frame = +1
Query: 13 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 192
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 193 KSRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 372
+ FYP +D ++ +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 373 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 459
TGPF N PLRR+ Q YVIGTSTK
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTK 145
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 70.9 bits (166), Expect = 4e-13
Identities = 50/149 (33%), Positives = 67/149 (44%)
Frame = +1
Query: 13 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 192
RN DL GV ++S+S+MYHK+ ++ V + EK
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPV--EKPA------- 62
Query: 193 KSRKSFYPTQDKIRGRSHGTSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 372
FYP +D + + + + ++TPGTV I+LAGR GKR
Sbjct: 63 ----KFYPAEDVKKPLVNRRK--PKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
Query: 373 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 459
TGPF N PLRR+ Q YVIGTSTK
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTK 145
>At5g60060.1 68418.m07531 F-box family protein various predicted
proteins, Arabidopsis thaliana ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 374
Score = 31.5 bits (68), Expect = 0.28
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +2
Query: 23 TSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEALVQSC*KAG 202
+S+T++ + ++ C T RL + LS + R K P+ P W S + L QS
Sbjct: 30 SSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQS--NVY 87
Query: 203 NHSTPLRTRSGVVLMARVSVNMCVGRDLTSLPAQC 307
PL R+ +V + + + DL S C
Sbjct: 88 KLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRIC 122
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 419 RRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPAN 315
RR H K PVK++ P +T L +C+P N
Sbjct: 468 RRSHERKLIPPVKANNPSLSTAVENPYLRSCVPGN 502
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 349 ARHACQRVCPPTECTLCRE 293
ARHAC+R C EC C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 283 VSSYAHVY*NSCHENDP*SCPEWGRMI 203
+ +A V +SC+END SC W +I
Sbjct: 345 LKQFAQVLKSSCNENDTLSCTLWDSLI 371
>At5g62910.1 68418.m07894 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 327
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 284 LTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRVPC-AGFR 430
L +L Q +F +SV+ C +CY LDL S +PC GFR
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC--PICYEDLDLTDSNFLPCPCGFR 274
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +2
Query: 299 AQCAFCWR-----ADTLASVSCSLECCRVVC-YSSLDLLLSTR 409
AQC FCW AD ++ + + + C +C +SSL L R
Sbjct: 279 AQCIFCWSSVVRLADIVSKIPFAGDICSEICSFSSLSRLCLIR 321
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 168 WRHSYSPAEKQEIILPHSGQDQG 236
++H+YS +E++L H G +G
Sbjct: 281 YKHAYSDGHLEEVVLRHLGSQEG 303
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 168 WRHSYSPAEKQEIILPHSGQDQG 236
++H+YS +E++L H G +G
Sbjct: 281 YKHAYSDGHLEEVVLRHLGSQEG 303
>At1g71015.1 68414.m08194 expressed protein
Length = 195
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 44 VSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEAL 178
+ P ++R+Y + + RT K ++PR S + A +R+E L
Sbjct: 57 LEPHQNLESKRIYFMVELPRTWKERTPRRVRSGIQMSAKERLENL 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,725
Number of Sequences: 28952
Number of extensions: 218573
Number of successful extensions: 573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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