Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C16
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    56   5e-09
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   7.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.7  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 23/64 (35%), Positives = 35/64 (54%)
 Frame = +3

Query: 63  IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
           I NP+Y+G W+P  I NP + G W   +I NP+Y  D +      +  VG +LW ++   
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNI 399

Query: 243 IFNN 254
            F+N
Sbjct: 400 RFSN 403


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 279 LAKEKGEIIKKMQEGEKKMK 338
           L  E GEI+K++ + EKK+K
Sbjct: 206 LLDENGEILKRLVKKEKKLK 225


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 84  GVWAPK-QIDNPAYKGPWIHPEIDNP 158
           G+  PK  +D  +Y G W  P+ D+P
Sbjct: 130 GLGEPKFNVDGTSYDGDWGRPQNDSP 155


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 117  AYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTD---DPALAK 287
            A + PW   EID+P++  D+       IC++ LD         F   LF +   D    K
Sbjct: 1201 ASENPWFWFEIDSPKFISDT---LEAMICAIFLDSGFSLQSLQFVLPLFLNSLGDATHTK 1257

Query: 288  EKGEIIKKMQE 320
             KG+I  K+ +
Sbjct: 1258 AKGDIEHKVYQ 1268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,772
Number of Sequences: 5004
Number of extensions: 28651
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)