Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C16
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 101 3e-22
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 97 6e-21
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 92 3e-19
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 91 7e-19
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 70 1e-12
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 36 0.029
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179... 30 1.5
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 29 3.4
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 101 bits (243), Expect = 3e-22
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +3
Query: 63 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
I NP+YKG W K+I NP Y+G W P IDNP++ D +Y D + +G++LWQVKSGT
Sbjct: 277 IPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGT 336
Query: 243 IFNNFLFTDDPALAKEKGE 299
+F+NFL TDDP LAK E
Sbjct: 337 LFDNFLITDDPELAKTFAE 355
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 97.5 bits (232), Expect = 6e-21
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = +3
Query: 63 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
I NP+YKG W K++ NP YKG W P I NP+Y D +Y D + +G++LWQVKSGT
Sbjct: 284 IPNPEYKGPWNQKKLKNPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQVKSGT 343
Query: 243 IFNNFLFTDDPALAKEKGE 299
+F+N L TDDP AK+ E
Sbjct: 344 LFDNILITDDPEYAKKFAE 362
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 91.9 bits (218), Expect = 3e-19
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 63 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
I NP+YKG W K+I NP YKG W P IDNPE+ D +LY + VG+++WQVK+G+
Sbjct: 275 IPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGS 334
Query: 243 IFNNFLFTDDPALAKE-KGEIIKKMQEGEKK 332
+F+N L DDP A+ E+ +E EK+
Sbjct: 335 VFDNILICDDPEYARSVVDEVRAANKEAEKE 365
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 90.6 bits (215), Expect = 7e-19
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = +3
Query: 63 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
I NP YKG W K+I NP YKG W P IDNPE+ D +LY + +G+++WQVK+G+
Sbjct: 275 IPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGS 334
Query: 243 IFNNFLFTDDPALAKEKGE 299
+F+N L DDP A++ E
Sbjct: 335 VFDNILICDDPEYARKAAE 353
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/72 (43%), Positives = 43/72 (59%)
Frame = +3
Query: 69 NPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIF 248
NP YKG W IDNP YKG W EI NPEY + + D I ++G+++W ++ G +F
Sbjct: 319 NPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILF 377
Query: 249 NNFLFTDDPALA 284
+N L DD +A
Sbjct: 378 DNILIADDEKVA 389
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 225 QVKSGTIFNNFLFTDDPALAKEKGE 299
+VKSGT+F+N L TDDP AK+ E
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAE 61
>04_04_1603 -
34716753-34717097,34717512-34717659,34717747-34717984,
34718075-34718285,34718398-34718513,34718698-34718793,
34719279-34719306
Length = 393
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 156 PEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGEI--IKKMQE 320
PEY L KR +I S G+ + ++ SG + L DD L ++ E+ + K++E
Sbjct: 235 PEYAWHGQLTKRADIYSFGVLVLEIVSGKSSSRSLLADDKILLEKAWELHEVGKLKE 291
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 474 ACVCQDNTCTDGYY---LAYVCVCVG 542
AC+ + + C DGY+ L Y C+C G
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDG 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,457,143
Number of Sequences: 37544
Number of extensions: 197166
Number of successful extensions: 639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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