Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C16
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   2e-30
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                56   2e-08
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)                   30   1.5  
SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 28   4.6  
SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)                 28   6.1  
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  128 bits (310), Expect = 2e-30
 Identities = 58/93 (62%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
 Frame = +3

Query: 63   IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
            IDNP+YKG W PKQIDNP YKG W+HPEIDNPEY  D  LY   +I ++G DLWQVKSGT
Sbjct: 949  IDNPEYKGEWKPKQIDNPNYKGEWVHPEIDNPEYKADDKLYMYKDIGAIGFDLWQVKSGT 1008

Query: 243  IFNNFLFTDDPALAKE-KGEIIKKMQEGEKKMK 338
            IF+N L TD    A++   E   K +EGEKKMK
Sbjct: 1009 IFDNVLVTDSVEHAEQFAKETFDKTKEGEKKMK 1041


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/67 (41%), Positives = 35/67 (52%)
 Frame = +3

Query: 84  GVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLF 263
           G W P   DNP YKG W  P IDNP Y              VGL+LW + S  +F+N + 
Sbjct: 222 GEWKPPMADNPEYKGKWSAPLIDNPNYK-----------VGVGLELWSMTSDILFDNVIV 270

Query: 264 TDDPALA 284
           T+D A+A
Sbjct: 271 TNDKAVA 277


>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
          Length = 689

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 90  WAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVK 233
           W  KQ+   A++  W     +NP  + D+NLY+ + +   G+  WQV+
Sbjct: 640 WLDKQMSFIAFQEGWAL-YAENPILSHDTNLYEDNVLQRYGMLKWQVR 686


>SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 90  WAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVK 233
           W  K    P YK   I  +  +P YTP    Y    + ++  DL+Q K
Sbjct: 478 WVVKVCGEPPYKSCSIASKQPSPHYTPQGYQYLSKLVATLVRDLFQRK 525


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 111 NPAYKGPWIHPEIDNPE-YTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAK 287
           NP YK P     I NPE Y    +      + +    +W+  +  +F    F   P    
Sbjct: 20  NPEYKNPGKRNGIRNPEPYWRSCHEAMTYPLATRHRQIWRENAEKVFQEVRFCQIPKRYL 79

Query: 288 EKGEIIKKMQEGEKKMK 338
            K +++ ++ EGEK  K
Sbjct: 80  LK-QVVPELVEGEKMCK 95


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 177 NLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 299
           +L ++ EIC   L  +  K   +F  F F  DPAL +  G+
Sbjct: 634 HLLEQLEICQKSLSGYLEKKRLLFPRFFFVSDPALLEILGQ 674


>SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 131 WSLVCRVVNLFRCPDALVVGVVDHRWFPLSIHLIIP 24
           W+   + + +   P A+ V  +  +W+PLS  ++IP
Sbjct: 303 WTGQAQTIGMLSIPVAVAVKKLLPQWYPLSYQIVIP 338


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 562 SMHAHNTPTHTHTYAK*YPSVHVLS*HTHAQTLY 461
           S HAH T +H H  +      HV S +TH  T Y
Sbjct: 388 SSHAHVTSSHAHVTSS---HAHVTSSYTHVTTSY 418


>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
          Length = 2297

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 81  KGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRD 194
           KG       D P +K P +  EID P+     +LY  D
Sbjct: 735 KGKSGDIDFDGPDFKSPKLKGEIDTPDINVKGDLYTPD 772


>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 105 IDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVG--LDLWQVKSGTIFNNFLFTDDP- 275
           + N    G  +  +  +PEY     L+K+   C  G  +D+W ++  + F NFL    P 
Sbjct: 163 LSNKYSGGELLKTQCGSPEYAAPE-LFKKG--CRYGGEVDIWSLQPVSTFANFLILRTPH 219

Query: 276 ALAKEKGEIIKKMQEG 323
           +  + + +++ +M  G
Sbjct: 220 SGGRGRNDLVHQMSRG 235


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 177  NLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 299
            +L ++ E+C   L  +  K   +F  F F  DPAL +  G+
Sbjct: 1670 HLLEQLELCQKSLTGYLEKKRLVFPRFFFVSDPALLEILGQ 1710


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 68   QPRL-QGRLGT*TD*QPCIQGTMDPPGD*QP 157
            QPR+ QG+L    D  PC +G++ PP + +P
Sbjct: 1834 QPRIEQGKLQLWVDIFPCTEGSIKPPIEIEP 1864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,390,121
Number of Sequences: 59808
Number of extensions: 241906
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)