Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C16
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   122   2e-28
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   122   2e-28
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    62   2e-10
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    28   4.0  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    27   7.0  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    27   9.3  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  122 bits (293), Expect = 2e-28
 Identities = 54/93 (58%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +3

Query: 63  IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
           IDNP+YKG W PKQI NPAYKG WIHPEI+NPEYTPD  LY  +   ++G DLWQVKSGT
Sbjct: 261 IDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGT 320

Query: 243 IFNNFLFTDDPALAK-EKGEIIKKMQEGEKKMK 338
           IF+N + TD    A+    E   K++  EK+ K
Sbjct: 321 IFDNIIITDSVEEAEAHAAETFDKLKTVEKEKK 353


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  122 bits (293), Expect = 2e-28
 Identities = 54/93 (58%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +3

Query: 63  IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
           IDNP+YKG W PKQI NPAYKG WIHPEI+NPEYTPD  LY  +   ++G DLWQVKSGT
Sbjct: 261 IDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGT 320

Query: 243 IFNNFLFTDDPALAK-EKGEIIKKMQEGEKKMK 338
           IF+N + TD    A+    E   K++  EK+ K
Sbjct: 321 IFDNIIITDSVEEAEAHAAETFDKLKTVEKEKK 353


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/68 (39%), Positives = 36/68 (52%)
 Frame = +3

Query: 63  IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 242
           I NP YKG W   +I NPA+KG W    IDNP Y           I +VG+++W +    
Sbjct: 366 IKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENI 425

Query: 243 IFNNFLFT 266
           +F+N L T
Sbjct: 426 LFDNILIT 433



 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +3

Query: 75  DYKGVWAPKQIDNPAYK-----GPWIHPEIDNPEY 164
           D  G W    IDNPA K     G W  P I NP+Y
Sbjct: 337 DMDGSWEAPLIDNPACKGLSGCGTWKAPTIKNPKY 371


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 235 DLTCHKSRPTEHISSRLYRFESGVYS 158
           D+ C++SR  EHI++ +  F++ +YS
Sbjct: 385 DVPCYRSRSKEHITNGMADFKNDMYS 410


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +3

Query: 105 IDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNN 254
           +  P  +     P+   P  TP SN Y  D  C+      + ++ T++ N
Sbjct: 455 VQQPQQQPQQQQPQQQRPATTPQSNCYNEDPCCNQWSRQNECRTNTVYMN 504


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 42   HPSHHPNLQAYWH 4
            HP HHP+LQ ++H
Sbjct: 1620 HPPHHPHLQNHYH 1632


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 42   HPSHHPNLQAYWH 4
            HP HHP+LQ ++H
Sbjct: 1781 HPPHHPHLQNHYH 1793


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +3

Query: 141 PEIDNPEYTPDSNLYKRDEICSV---GLDLWQVKSGTIFNNFLFTDDPALAKEKGEIIKK 311
           P++ +P+Y    N+   D++  V    L    V    + +N +        +E GE  KK
Sbjct: 271 PDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQETGEAEKK 330

Query: 312 MQEGEKKMK 338
             E +KK K
Sbjct: 331 KDEKDKKDK 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,276
Number of Sequences: 27780
Number of extensions: 169899
Number of successful extensions: 537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)